Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8209

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8208: 16576 - BLAST putative Rho guanyl-nucleotide exchange factor [Rhodo..., at 672999 to 674159 16576 mRNA_8209: 16577 - K17618 UBLCP1 ubiquitin-like domain-containing CTD phosphatase 1, at 674405 to 676070 16577 mRNA_8210: 16578 - BLAST WetA [Penicillium camemberti], at 676267 to 678027 16578

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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673,650 - 16576 mRNA_8208 0.56 -0.6
673,796 + 16576 mRNA_8208 0.69 1.3
674,701 + 16577 mRNA_8209 0.18 1.7
674,843 - 16577 mRNA_8209 0.26 0.2
675,373 - 16577 mRNA_8209 0.58 -0.6
675,672 - 16577 mRNA_8209 0.76 -0.6
675,689 + 16577 mRNA_8209 0.77 1.3
675,805 - 16577 mRNA_8209 0.84 -0.3
675,818 - 16577 mRNA_8209 0.85 2.7
675,822 + 16577 mRNA_8209 0.85 1.7
675,966 - -0.1
675,975 - 4.7
676,113 - 0.4
676,117 - -0.3
676,121 + 0.0
676,125 - 1.0
676,132 + 0.2
676,134 - -1.2
676,157 + -0.8
676,157 - -0.3
676,458 + 16578 mRNA_8210 0.11 0.3
676,878 - 16578 mRNA_8210 0.35 0.6