Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8193

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8192: 16560 - K12780 REC8 meiotic recombination protein REC8, fungi type, at 637795 to 641120 16560 mRNA_8193: 16561 - Hypothetical Protein, at 641323 to 644118 16561 mRNA_8194: 16562 - K20794 NAA40, NAT4 N-alpha-acetyltransferase 40, at 644404 to 645092 16562

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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640,370 + 16560 mRNA_8192 0.77 0.6
640,388 - 16560 mRNA_8192 0.78 0.3
640,553 - 16560 mRNA_8192 0.83 0.2
640,860 - 0.3
641,129 - -0.6
641,436 + 0.2
641,584 + -0.3
642,447 + 16561 mRNA_8193 0.40 0.6
643,340 - 16561 mRNA_8193 0.72 2.2
643,632 + 16561 mRNA_8193 0.83 1.7
643,887 - 0.3
643,900 - 0.1
643,907 + 1.3
644,035 + -0.4
644,041 - 0.8
644,064 + 1.8
644,192 + 0.7
644,195 - -0.0
644,209 + 0.2
644,325 - -1.8
644,344 + -1.2
644,510 + 16562 mRNA_8194 0.15 2.0
644,628 - 16562 mRNA_8194 0.33 0.1
644,650 + 16562 mRNA_8194 0.36 -0.2
644,809 + 16562 mRNA_8194 0.59 -2.3