Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8168

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8168: 16536 - BLAST PQ-loop-domain-containing protein [Dichomitus squ..., at 580110 to 581600 16536 mRNA_8169: 16537 - HMMPfam-Anaphase-promoting complex, cyclosome, subunit 4-PF12896, at 582440 to 584866 16537

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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579,181 - -0.7
579,182 - 0.5
579,184 + 1.7
579,187 - 1.7
579,199 + -1.3
579,316 - -1.0
579,324 - -0.6
579,341 + 1.4
579,620 - -0.8
579,643 - 2.1
579,779 + 0.1
579,816 + -0.7
580,071 + -0.0
580,654 - 16536 mRNA_8168 0.36 1.1
580,662 - 16536 mRNA_8168 0.37 1.6
580,664 + 16536 mRNA_8168 0.37 1.2
580,797 + 16536 mRNA_8168 0.46 -0.7
580,828 + 16536 mRNA_8168 0.48 0.3
580,966 - 16536 mRNA_8168 0.57 0.1
580,994 + 16536 mRNA_8168 0.59 1.5
581,018 - 16536 mRNA_8168 0.61 1.4
581,064 + 16536 mRNA_8168 0.64 0.7
581,103 + 16536 mRNA_8168 0.67 0.7
581,118 + 16536 mRNA_8168 0.68 2.6
581,127 - 16536 mRNA_8168 0.68 0.2
581,182 + 16536 mRNA_8168 0.72 -1.5
581,184 - 16536 mRNA_8168 0.72 0.8
581,191 - 16536 mRNA_8168 0.73 0.0
581,213 - 16536 mRNA_8168 0.74 0.3
581,267 - 16536 mRNA_8168 0.78 1.5
581,410 + 16536 mRNA_8168 0.87 -0.7
581,481 - 0.5
581,656 - 0.0
581,661 - 1.9
581,779 + 2.0
581,788 + 0.9
581,874 - -1.1
581,914 - 1.1
581,927 + 0.8
581,935 + 1.2
581,946 + 1.9
582,060 - 2.8
582,067 + 1.3
582,073 + 1.1
582,222 + -1.0
582,243 - 0.2
582,252 - -1.8
582,353 + 0.3
582,354 - -1.2
582,389 + 0.7