Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8166

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569404 to 570854 16533 mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571164 to 574503 16534 mRNA_8167: 16535 - K04350 RASGRP1 RAS guanyl-releasing protein 1, at 574672 to 578875 16535

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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570,181 - 16533 mRNA_8165 0.54 1.7
570,218 - 16533 mRNA_8165 0.56 -0.2
570,507 - 16533 mRNA_8165 0.76 0.6
570,640 - 16533 mRNA_8165 0.85 2.1
571,045 - 1.2
571,050 + 0.5
571,072 + 0.4
571,202 - 0.5
571,359 - -0.5
571,370 - 0.1
571,372 - 0.7
571,386 + 0.4
571,513 - 16534 mRNA_8166 0.10 0.9
571,514 + 16534 mRNA_8166 0.10 0.9
571,570 + 16534 mRNA_8166 0.12 1.7
572,091 - 16534 mRNA_8166 0.28 0.4
572,547 + 16534 mRNA_8166 0.41 1.6
573,009 + 16534 mRNA_8166 0.55 1.0
573,091 + 16534 mRNA_8166 0.58 1.7
573,114 - 16534 mRNA_8166 0.58 0.3
573,447 + 16534 mRNA_8166 0.68 2.1
573,463 + 16534 mRNA_8166 0.69 -0.5
573,793 - 16534 mRNA_8166 0.79 0.3
573,943 + 16534 mRNA_8166 0.83 -0.1
574,588 + 0.5
574,592 + -0.0
574,700 - -0.2
574,817 - 0.8
574,887 + 0.8
575,030 + 0.1
575,205 - 16535 mRNA_8167 0.13 0.2
575,259 - 16535 mRNA_8167 0.14 0.8
575,470 + 16535 mRNA_8167 0.19 0.6