Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8165

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8165: 16533 - HMMPfam-Saccharopine dehydrogenase-PF03435,SUPERFAMILY--SSF51735, at 569404 to 570854 16533 mRNA_8166: 16534 - BLAST receptor-activated Ca2+-permeable cation channel [Aur..., at 571164 to 574503 16534

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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568,419 - -0.5
568,583 - -0.1
568,763 + 2.6
568,880 - -0.2
568,883 - -0.9
568,915 + 0.5
569,180 + 0.8
569,185 + 1.5
569,187 + 1.0
569,197 - -1.2
569,198 + -0.7
569,430 - -0.4
569,902 + 16533 mRNA_8165 0.34 1.4
570,181 - 16533 mRNA_8165 0.54 1.7
570,218 - 16533 mRNA_8165 0.56 -0.2
570,507 - 16533 mRNA_8165 0.76 0.6
570,640 - 16533 mRNA_8165 0.85 2.1
571,045 - 1.2
571,050 + 0.5
571,072 + 0.4
571,202 - 0.5
571,359 - -0.5
571,370 - 0.1
571,372 - 0.7
571,386 + 0.4
571,513 - 16534 mRNA_8166 0.10 0.9
571,514 + 16534 mRNA_8166 0.10 0.9
571,570 + 16534 mRNA_8166 0.12 1.7