Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8163

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560914 to 563494 16530 mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563626 to 564400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564616 to 567626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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562,632 + 16530 mRNA_8162 0.67 0.4
562,651 + 16530 mRNA_8162 0.67 -0.6
563,233 + 16530 mRNA_8162 0.90 -0.5
563,375 + -0.0
563,389 + 0.4
563,389 + 0.9
563,515 - 0.3
563,524 + 0.9
563,538 + -1.2
563,545 + -0.9
563,547 + 1.7
563,556 + 0.7
563,979 + 16531 mRNA_8163 0.46 -0.1
564,106 - 16531 mRNA_8163 0.62 -0.1
564,110 + 16531 mRNA_8163 0.62 1.9
564,212 - 16531 mRNA_8163 0.76 1.7
564,222 - 16531 mRNA_8163 0.77 -0.2
564,234 - 16531 mRNA_8163 0.78 0.1
564,410 + -0.4
564,431 - 0.7
564,435 + 0.0
564,576 - -0.1
564,586 + 0.2
564,688 - 1.0
564,858 + 0.9
564,972 - 16532 mRNA_8164 0.12 0.6
565,035 + 16532 mRNA_8164 0.14 0.4
565,147 + 16532 mRNA_8164 0.18 -0.5
565,150 - 16532 mRNA_8164 0.18 -0.7
565,175 + 16532 mRNA_8164 0.19 1.6