Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8154

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537692 to 539063 16521 mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895 16522 mRNA_8155: 16523 - K15361 WDR48, UAF1 WD repeat-containing protein 48, at 541110 to 545271 16523

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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538,384 - 16521 mRNA_8153 0.50 2.9
538,565 - 16521 mRNA_8153 0.64 0.2
538,843 - 16521 mRNA_8153 0.84 -0.1
538,845 + 16521 mRNA_8153 0.84 -0.3
538,847 + 16521 mRNA_8153 0.84 0.9
538,853 + 16521 mRNA_8153 0.85 1.0
538,855 - 16521 mRNA_8153 0.85 2.4
538,861 + 16521 mRNA_8153 0.85 -1.4
538,887 + 16521 mRNA_8153 0.87 1.4
539,135 + 1.1
539,158 - 0.4
539,164 - -2.7
539,285 + 0.4
539,297 - -1.8
539,303 + -1.2
539,305 + -0.6
539,462 - 16522 mRNA_8154 0.16 -0.1
539,472 + 16522 mRNA_8154 0.16 0.5
539,478 + 16522 mRNA_8154 0.17 0.6
539,730 - 16522 mRNA_8154 0.31 0.6
540,511 + 16522 mRNA_8154 0.77 -0.9
540,537 - 16522 mRNA_8154 0.79 0.0
540,650 + 16522 mRNA_8154 0.86 0.6
540,854 + 1.1
540,899 + -0.6
540,916 + 0.2
541,339 + 0.3