Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8153

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8152: 16520 - KOG2944 Glyoxalase, at 536656 to 537504 16520 mRNA_8153: 16521 - HMMPfam-Chalcone-flavanone isomerase-PF02431,SUPERFAMILY--SSF54626, at 537692 to 539063 16521 mRNA_8154: 16522 - HMMPfam-Ketopantoate reductase PanE/ApbA-PF02558,HMMPfam-Ketopantoate reductase PanE/ApbA C terminal-PF08546,SUPERFAMILY--SSF48179, at 539197 to 540895 16522

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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536,750 + 16520 mRNA_8152 0.11 -0.3
537,125 - 16520 mRNA_8152 0.55 -0.1
537,241 - 16520 mRNA_8152 0.69 1.2
537,333 - 16520 mRNA_8152 0.80 0.1
537,361 - 16520 mRNA_8152 0.83 1.0
537,465 - 2.0
537,470 - 0.5
537,619 - 0.7
537,622 + 1.6
537,641 - 2.7
537,645 - 2.2
537,649 + 1.3
537,652 - 0.3
537,657 - -0.2
537,667 + -0.0
537,668 - -1.7
537,672 - 0.6
537,692 + 0.1
537,695 - 2.0
537,720 - -0.7
537,728 + -0.8
537,728 + -0.2
537,730 - 2.9
537,731 + 0.0
537,843 - 16521 mRNA_8153 0.11 0.4
538,004 + 16521 mRNA_8153 0.23 0.5
538,014 - 16521 mRNA_8153 0.23 0.6
538,024 + 16521 mRNA_8153 0.24 0.5
538,384 - 16521 mRNA_8153 0.50 2.9
538,565 - 16521 mRNA_8153 0.64 0.2
538,843 - 16521 mRNA_8153 0.84 -0.1
538,845 + 16521 mRNA_8153 0.84 -0.3
538,847 + 16521 mRNA_8153 0.84 0.9
538,853 + 16521 mRNA_8153 0.85 1.0
538,855 - 16521 mRNA_8153 0.85 2.4
538,861 + 16521 mRNA_8153 0.85 -1.4
538,887 + 16521 mRNA_8153 0.87 1.4
539,135 + 1.1
539,158 - 0.4
539,164 - -2.7
539,285 + 0.4
539,297 - -1.8
539,303 + -1.2
539,305 + -0.6
539,462 - 16522 mRNA_8154 0.16 -0.1
539,472 + 16522 mRNA_8154 0.16 0.5
539,478 + 16522 mRNA_8154 0.17 0.6
539,730 - 16522 mRNA_8154 0.31 0.6