Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8148

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8147: 16515 - HMMPfam-Enoyl-CoA hydratase/isomerase family-PF00378,SUPERFAMILY--SSF52096, at 525577 to 526736 16515 mRNA_8148: 16516 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 527058 to 528382 16516 mRNA_8149: 16517 - KOG1198 Zinc-binding oxidoreductase, at 528930 to 530418 16517

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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526,113 + 16515 mRNA_8147 0.46 -0.7
526,194 - 16515 mRNA_8147 0.53 -0.5
526,352 + 16515 mRNA_8147 0.67 0.9
526,530 - 16515 mRNA_8147 0.82 0.2
526,683 - -0.7
526,712 + 0.2
526,812 - -1.4
526,814 - 0.7
526,835 - 0.9
526,835 - 1.3
526,835 + 0.5
526,850 + 2.5
526,860 - -0.1
527,471 - 16516 mRNA_8148 0.31 -0.7
527,721 + 16516 mRNA_8148 0.50 2.4
528,322 - 0.7
528,327 + 0.6
528,481 + 1.3
528,481 + 1.5
528,490 + 1.7
528,498 - -0.1
528,506 - -0.9
528,513 + -0.3
528,549 + 0.9
528,599 - 0.5
528,618 - 0.5
528,625 + 0.7
528,625 + -1.1
528,646 - -1.1
528,651 + -0.0
528,657 - 1.3
528,663 + -0.2
528,671 + 0.6
528,776 + 1.1
528,777 - -1.0
528,779 + 1.2
528,785 + 2.4
528,788 - 2.9
528,817 - 0.2
528,825 + -0.8
528,827 + 1.9
528,827 + 0.3
528,828 - -1.4
528,832 + 0.1
528,841 + -0.2
528,854 + 0.4
528,854 - 1.9
528,854 - 0.5
528,856 + 0.1
528,857 + 0.7
528,864 - -0.9
528,873 + -1.2
528,897 - -0.9
528,898 - -0.2
529,124 - 16517 mRNA_8149 0.13 -1.0
529,137 + 16517 mRNA_8149 0.14 0.0