Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8134

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497849 to 499471 16501 mRNA_8134: 16502 - K17891 ERV2 FAD-linked sulfhydryl oxidase, at 499716 to 500735 16502 mRNA_8135: 16503 - K00804 GGPS1 geranylgeranyl diphosphate synthase, type III, at 500872 to 502376 16503

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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498,792 - 16501 mRNA_8133 0.58 1.2
499,084 + 16501 mRNA_8133 0.76 0.9
499,624 - 0.2
499,640 - 0.3
500,156 - 16502 mRNA_8134 0.43 0.5
500,237 + 16502 mRNA_8134 0.51 1.6
500,362 + 16502 mRNA_8134 0.63 -0.3
500,373 - 16502 mRNA_8134 0.64 -0.1
500,507 - 16502 mRNA_8134 0.78 1.1
500,514 - 16502 mRNA_8134 0.78 -1.5
500,517 + 16502 mRNA_8134 0.79 1.3
500,530 - 16502 mRNA_8134 0.80 0.7
500,532 - 16502 mRNA_8134 0.80 -0.3
500,537 + 16502 mRNA_8134 0.80 2.0
500,790 - 0.8
500,799 - 1.1
500,801 - -0.3
500,808 + -0.6
500,823 + -1.2
500,839 + 1.4
500,915 - -0.1
500,982 + -1.3
500,991 + 0.2
501,004 + 0.3
501,005 - 1.0
501,294 + 16503 mRNA_8135 0.28 -2.7
501,295 - 16503 mRNA_8135 0.28 0.1
501,317 + 16503 mRNA_8135 0.30 -1.6
501,430 + 16503 mRNA_8135 0.37 -0.0