Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8131

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488795 to 491438 16498 mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491877 to 495566 16499 mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495876 to 497390 16500

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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491,069 + 16498 mRNA_8130 0.86 0.5
491,304 + 1.7
491,411 - -0.4
491,559 + 1.3
491,732 - -0.6
491,740 + -1.9
491,877 - 2.2
492,218 + 1.4
492,362 + 16499 mRNA_8131 0.13 1.7
492,380 + 16499 mRNA_8131 0.14 2.0
492,478 - 16499 mRNA_8131 0.16 2.6
493,442 - 16499 mRNA_8131 0.42 0.5
493,546 + 16499 mRNA_8131 0.45 1.8
493,549 - 16499 mRNA_8131 0.45 -0.5
493,829 + 16499 mRNA_8131 0.53 -0.9
494,207 + 16499 mRNA_8131 0.63 1.2
494,748 - 16499 mRNA_8131 0.78 2.6
495,187 + 16499 mRNA_8131 0.90 0.4
495,211 - 1.9
495,215 - -1.5
495,341 - -1.6
495,348 - 1.2
495,349 + -0.0
495,356 - 2.2
495,618 + -2.2
495,621 - -1.8
495,622 + -0.1
495,624 - 0.3
495,624 - 0.1
495,625 + -0.0
495,638 + -0.8
495,651 + 3.1
495,800 - -0.3
495,801 + -1.3
495,806 - 0.7
495,818 + -1.3
495,957 - 0.2
496,097 - 16500 mRNA_8132 0.15 0.6
496,104 + 16500 mRNA_8132 0.15 1.3
496,105 - 16500 mRNA_8132 0.15 0.1
496,106 + 16500 mRNA_8132 0.15 -0.7
496,391 + 16500 mRNA_8132 0.34 -0.9
496,401 + 16500 mRNA_8132 0.35 0.1
496,525 - 16500 mRNA_8132 0.43 -0.2