Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8086

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8085: 16453 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 384174 to 386638 16453 mRNA_8086: 16454 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 387479 to 389690 16454

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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386,656 + 0.8
386,833 + -0.3
386,861 + 1.6
386,967 - 1.8
386,973 - -0.3
386,983 - 0.9
386,987 - 0.2
386,990 - -1.8
386,995 + 0.4
387,000 - -0.5
387,002 + 2.2
387,005 + 0.1
387,006 - -1.1
387,006 - -1.4
387,011 + 1.4
387,014 + -1.2
387,021 + 1.6
387,023 + 2.3
387,024 - -2.2
387,024 - -2.5
387,024 - -0.5
387,025 + 0.1
387,040 + 1.8
387,045 + 0.5
387,073 - 0.0
387,135 - -2.5
387,206 - -0.9
387,298 + -0.7
387,312 - -0.7
387,313 - -1.1
387,325 - -0.5
387,341 - -2.5
387,439 + 0.5
387,461 + 2.3
387,773 + 16454 mRNA_8086 0.13 -0.0
387,890 - 16454 mRNA_8086 0.19 0.2
388,184 + 16454 mRNA_8086 0.32 0.1
388,768 - 16454 mRNA_8086 0.58 1.0
388,774 + 16454 mRNA_8086 0.59 0.5
388,776 - 16454 mRNA_8086 0.59 0.0
388,792 - 16454 mRNA_8086 0.59 0.6
388,793 + 16454 mRNA_8086 0.59 0.2
389,637 - 2.1
389,659 - -0.9
389,789 + -0.3
389,932 - 0.0
389,939 - -1.2
389,939 - 0.8
389,946 + 0.6
389,948 + -0.8
390,071 - -0.3
390,083 - -0.1
390,090 + 0.3
390,107 - -2.4
390,114 - 0.1
390,117 + -0.3
390,128 - 1.4
390,134 + -0.6
390,136 + -0.2
390,137 + 0.3
390,139 + 0.3
390,139 + -0.1
390,141 - 1.7
390,141 + 3.5
390,142 - 1.5
390,142 + -0.2
390,143 + 0.0
390,145 + 1.0
390,599 + -1.0