Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8070

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357161 to 359241 16439

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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351,975 + 1.2
352,103 - 0.9
352,112 + 1.0
352,381 - -0.2
352,381 - -1.0
352,413 - 0.4
352,415 - 0.0
352,422 - 0.4
352,547 - 1.4
352,692 - 0.9
352,692 - -2.2
352,693 - 0.8
352,700 + -1.1
352,709 - -1.8
352,714 + 2.2
352,855 - 1.3
352,884 - -0.2
352,999 - -0.8
353,272 - -0.1
353,425 - 16438 mRNA_8070 0.13 -0.2
353,440 + 16438 mRNA_8070 0.14 -2.2
353,507 - 16438 mRNA_8070 0.16 2.0
353,521 + 16438 mRNA_8070 0.16 -0.3
354,060 + 16438 mRNA_8070 0.32 0.8
354,141 + 16438 mRNA_8070 0.34 0.3
354,298 + 16438 mRNA_8070 0.39 0.5
354,417 + 16438 mRNA_8070 0.42 2.5
354,542 - 16438 mRNA_8070 0.46 -1.2
355,010 + 16438 mRNA_8070 0.60 0.1
355,170 + 16438 mRNA_8070 0.65 1.1
355,201 - 16438 mRNA_8070 0.65 1.7
355,461 - 16438 mRNA_8070 0.73 0.7
355,720 - 16438 mRNA_8070 0.81 0.5
355,736 + 16438 mRNA_8070 0.81 -0.6
355,993 - 16438 mRNA_8070 0.89 -0.0
356,002 + 16438 mRNA_8070 0.89 2.9
356,006 + 16438 mRNA_8070 0.89 -0.2
356,185 - -2.8
356,224 + -1.9
356,228 + -2.5
356,331 - 2.1
356,336 + -0.9
356,344 + -1.5
356,361 + 1.0
356,372 - 0.0
356,373 - 2.1
356,374 - -1.1
356,389 + 0.8
356,390 + -0.0
356,411 - -0.2
356,431 - 0.9
356,460 + 1.2
356,492 + 1.7
356,492 + -2.4
356,499 + 1.8
356,506 + 0.3
356,533 + 0.1
356,534 - 0.0
356,597 - -0.9
356,608 + 0.6
356,611 - 1.2
356,613 - 0.7
356,614 + 1.5
356,614 + -1.1
356,614 - 0.4
356,618 + -1.0
356,620 + -0.3
356,626 + 0.5
356,626 + 0.0
356,628 - 1.7
356,630 - -0.4
356,633 - 0.7
356,636 + 0.2
356,639 - 0.6
356,658 - -1.1
356,764 - 0.7
356,852 - 0.1
356,866 - -0.1
356,886 - 0.5
356,909 + -0.1
356,916 + 0.8
356,918 - -1.1
356,934 + -0.6
356,934 - 0.7
356,935 + -0.3
356,936 - 0.8
356,949 - -0.6
356,950 - -0.1
356,967 - 0.9
356,997 + -0.2
357,026 + 1.6
357,077 + -4.0
357,128 - -0.4
357,223 + -0.1