Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8062

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429 mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329647 to 331079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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328,827 - -0.5
328,852 - -0.1
329,278 + 16429 mRNA_8061 0.43 0.2
329,672 - 0.0
329,724 + -0.0
330,266 + 16430 mRNA_8062 0.43 -0.2
330,315 + 16430 mRNA_8062 0.47 -1.0
330,555 - 16430 mRNA_8062 0.63 -0.6
330,564 - 16430 mRNA_8062 0.64 -0.4
330,607 - 16430 mRNA_8062 0.67 0.2
330,723 - 16430 mRNA_8062 0.75 -0.8
330,750 - 16430 mRNA_8062 0.77 -0.2
330,976 - 1.9
331,009 + 2.8
331,121 - 0.7
331,136 - 0.4
331,146 - 0.2
331,203 + 0.9
331,272 + 0.3
331,281 + 1.5
331,288 - 0.2
331,305 + 0.1
331,315 + -0.2
331,325 - -0.5
331,330 + 2.6
331,343 - 0.4
331,351 - -0.1
331,351 - 0.6
331,352 - 0.6
331,359 + 0.2
331,359 - 2.2
331,360 + 1.1
331,364 - 0.6
331,365 - 0.4
331,373 - 1.8
331,379 + -0.6
331,384 + 0.1
331,394 + -0.3
331,496 + 0.2
331,506 - 0.6
331,522 - 1.8
331,535 + 0.7
331,636 - 1.5
331,667 + 0.2
331,767 + 16431 mRNA_8063 0.12 0.3
331,780 - 16431 mRNA_8063 0.13 0.8