Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8060

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8059: 16427 - HMMPfam-Translation initiation factor IF-3, C-terminal domain-PF00707,HMMPfam-Translation initiation factor IF-3, N-terminal domain-PF05198,SUPERFAMILY--SSF54364,SUPERFAMILY--SSF55200, at 324105 to 324902 16427 mRNA_8060: 16428 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 325618 to 328246 16428 mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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325,074 - -1.0
325,242 + -0.9
325,408 + 2.4
325,415 + -0.6
325,417 - -0.4
325,420 - -0.4
325,422 - 1.5
325,452 + 3.0
325,481 + -1.2
325,487 - -0.7
325,488 - 0.1
325,492 - 2.6
325,494 - 0.2
325,505 + 1.7
325,506 + 1.2
325,508 - -0.6
325,511 - 2.0
325,520 + -0.6
325,532 + 1.3
325,558 - 0.2
325,561 + 1.5
325,565 + -1.7
325,567 + -0.5
325,568 + 2.6
325,575 - 0.5
325,584 - 1.1
325,724 - 0.1
325,730 - 1.2
325,734 + -1.8
325,737 + 0.1
325,737 - 0.0
325,738 + 0.1
325,739 + 2.0
325,744 + 1.6
325,747 - -0.1
325,865 - -0.3
325,880 - -0.3
325,886 - 16428 mRNA_8060 0.10 0.8
325,898 + 16428 mRNA_8060 0.11 0.5
326,005 + 16428 mRNA_8060 0.15 -0.1
326,033 + 16428 mRNA_8060 0.16 -0.6
326,034 - 16428 mRNA_8060 0.16 -1.0
326,045 + 16428 mRNA_8060 0.16 -0.8
326,185 - 16428 mRNA_8060 0.22 -0.4
326,224 + 16428 mRNA_8060 0.23 0.4
326,902 + 16428 mRNA_8060 0.49 0.5
326,920 - 16428 mRNA_8060 0.50 2.9
327,243 + 16428 mRNA_8060 0.62 4.2
327,362 + 16428 mRNA_8060 0.66 0.1
327,508 + 16428 mRNA_8060 0.72 0.5
327,529 - 16428 mRNA_8060 0.73 0.5
327,617 - 16428 mRNA_8060 0.76 -0.8
327,618 + 16428 mRNA_8060 0.76 2.7
327,662 - 16428 mRNA_8060 0.78 3.3
327,708 + 16428 mRNA_8060 0.79 2.2
328,227 - 0.7
328,396 - 0.2
328,530 + -0.7
328,827 - -0.5
328,852 - -0.1