Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8043

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8042: 16410 - K17408 DAP3, MRPS29 small subunit ribosomal protein S29, at 288968 to 290792 16410 mRNA_8043: 16411 - K15283 SLC35E1 solute carrier family 35, member E1, at 291004 to 293289 16411 mRNA_8044: 16412 - KOG4520 Predicted coiled-coil protein, at 293561 to 294571 16412

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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291,310 - 16411 mRNA_8043 0.13 1.1
292,009 + 16411 mRNA_8043 0.44 -0.1
292,390 - 16411 mRNA_8043 0.61 -0.1
292,420 - 16411 mRNA_8043 0.62 -0.4
292,462 - 16411 mRNA_8043 0.64 0.3
292,547 - 16411 mRNA_8043 0.67 -1.2
292,608 + 16411 mRNA_8043 0.70 0.4
292,620 - 16411 mRNA_8043 0.71 -0.2
293,047 - 16411 mRNA_8043 0.89 0.2
293,167 + 2.1
293,179 - -0.5
293,329 - 0.5
293,331 + 0.2
293,468 + -1.0
293,492 + -0.3
293,495 - -1.3
293,522 - 0.5
293,643 - -0.5
293,645 - 0.2
293,660 + -0.7
293,816 + 16412 mRNA_8044 0.25 -2.2