Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8041

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8040: 16408 - BLAST putative Structural constituent of cytoskeleton [Rhod..., at 285968 to 287416 16408 mRNA_8041: 16409 - K13350 PXMP4, PMP24 peroxisomal membrane protein 4, at 287723 to 288731 16409 mRNA_8042: 16410 - K17408 DAP3, MRPS29 small subunit ribosomal protein S29, at 288968 to 290792 16410

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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287,295 - -1.6
287,443 + 0.3
287,545 + 0.1
287,574 + 0.1
287,574 - 0.7
287,593 + -0.8
287,608 + 2.0
287,619 - 0.4
287,758 - 0.5
287,768 - 0.9
287,883 - 16409 mRNA_8041 0.16 0.6
287,912 + 16409 mRNA_8041 0.19 2.8
288,224 + 16409 mRNA_8041 0.50 1.7
288,509 - 16409 mRNA_8041 0.78 -0.8
288,780 + 0.0
288,923 - 0.0
288,931 + 0.5
288,932 + 0.0
289,219 + 16410 mRNA_8042 0.14 1.0