Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8034

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272460 to 275670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275930 to 278853 16403

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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271,576 + 1.6
271,616 - 0.7
271,624 - 1.3
271,624 - 3.2
271,751 + 0.3
271,769 - 0.5
271,783 + 2.2
271,789 + 0.3
271,805 + -1.6
271,842 + -1.0
271,882 + 0.8
271,888 - -0.0
271,920 - 2.7
271,923 + 0.2
271,939 + 0.0
271,943 - 0.8
272,097 + 1.0
272,099 - 1.7
272,247 + -1.6
272,253 - 2.2
272,348 + 1.2
272,372 - 1.7
272,374 - -0.7
272,518 - 0.8
272,537 + 2.4
272,643 + -0.2
272,649 - -0.1
272,686 - 3.5
272,694 - 0.0
272,704 + 0.2
272,795 - 16402 mRNA_8034 0.10 0.2
272,800 + 16402 mRNA_8034 0.11 -0.9
272,803 + 16402 mRNA_8034 0.11 1.1
272,805 + 16402 mRNA_8034 0.11 1.2
272,826 - 16402 mRNA_8034 0.11 -0.4
272,847 + 16402 mRNA_8034 0.12 -0.2
272,848 + 16402 mRNA_8034 0.12 1.1
272,885 - 16402 mRNA_8034 0.13 1.1
272,935 + 16402 mRNA_8034 0.15 1.6
273,010 + 16402 mRNA_8034 0.17 0.4
273,040 + 16402 mRNA_8034 0.18 0.7
273,048 + 16402 mRNA_8034 0.18 0.1
273,053 - 16402 mRNA_8034 0.18 0.0
273,054 + 16402 mRNA_8034 0.18 -0.1
273,062 + 16402 mRNA_8034 0.19 3.2
273,068 + 16402 mRNA_8034 0.19 0.3
273,132 - 16402 mRNA_8034 0.21 0.3
273,153 - 16402 mRNA_8034 0.22 0.4
273,183 - 16402 mRNA_8034 0.23 0.2
273,183 - 16402 mRNA_8034 0.23 2.1
273,233 - 16402 mRNA_8034 0.24 1.5
273,331 - 16402 mRNA_8034 0.27 0.7
273,402 - 16402 mRNA_8034 0.29 0.6
273,484 + 16402 mRNA_8034 0.32 -0.3
273,828 - 16402 mRNA_8034 0.43 2.1
273,953 + 16402 mRNA_8034 0.46 0.5
274,100 - 16402 mRNA_8034 0.51 0.3
274,229 - 16402 mRNA_8034 0.55 0.5
274,242 - 16402 mRNA_8034 0.55 0.0
274,509 - 16402 mRNA_8034 0.64 0.7
274,826 + 16402 mRNA_8034 0.74 0.3
275,072 - 16402 mRNA_8034 0.81 0.8
275,104 - 16402 mRNA_8034 0.82 -0.8
275,223 + 16402 mRNA_8034 0.86 -0.3
275,384 - 0.2
275,417 - -0.7
275,435 + 0.9
275,541 - -1.4
275,563 - 0.5
275,564 - 1.7
275,565 - 1.3
275,571 - 1.7
275,610 - 0.9
275,613 + 3.2
275,633 + 1.0
275,705 - 0.8
275,709 - -1.3
275,713 - 1.6
275,716 + 0.5
275,718 - -0.6
275,723 - -1.8
275,723 - 0.2
275,726 + -1.9
275,735 + 0.5
275,742 - -1.2
275,763 - -1.1
275,763 + -0.0
276,030 + 0.7
276,083 - 0.3
276,166 - -0.1
276,201 - 1.1
276,456 + 16403 mRNA_8035 0.18 -0.6
276,510 - 16403 mRNA_8035 0.20 0.3