Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8015

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213638 to 214851 16382 mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215153 to 216105 16383 mRNA_8016: 16384 - K11968 ARIH1 ariadne-1, at 216301 to 218518 16384

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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214,354 - 16382 mRNA_8014 0.59 -2.8
214,533 - 16382 mRNA_8014 0.74 -1.4
214,791 - 0.0
214,796 + -0.5
214,944 + 0.7
215,235 - 0.8
215,263 - 16383 mRNA_8015 0.12 1.7
215,308 - 16383 mRNA_8015 0.16 0.6
215,312 - 16383 mRNA_8015 0.17 0.4
215,491 + 16383 mRNA_8015 0.35 -0.4
215,519 - 16383 mRNA_8015 0.38 -1.4
215,539 + 16383 mRNA_8015 0.41 -0.4
215,540 - 16383 mRNA_8015 0.41 2.9
215,548 - 16383 mRNA_8015 0.41 0.1
215,548 + 16383 mRNA_8015 0.41 0.2
215,558 + 16383 mRNA_8015 0.42 -0.1
215,582 + 16383 mRNA_8015 0.45 -0.2
215,598 - 16383 mRNA_8015 0.47 -0.4
215,620 - 16383 mRNA_8015 0.49 0.6
215,661 + 16383 mRNA_8015 0.53 -0.2
215,667 - 16383 mRNA_8015 0.54 0.3
215,671 - 16383 mRNA_8015 0.54 -0.3
215,686 + 16383 mRNA_8015 0.56 -1.5
215,692 + 16383 mRNA_8015 0.57 0.3
215,834 - 16383 mRNA_8015 0.71 -1.1
215,948 + 16383 mRNA_8015 0.83 -0.4
215,972 - 16383 mRNA_8015 0.86 0.7
215,976 + 16383 mRNA_8015 0.86 1.4
216,105 + -0.0
216,228 + 1.3
216,265 - 1.2
216,282 - -0.3
216,292 + -0.7