Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8014

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213638 to 214851 16382 mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215153 to 216105 16383

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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212,750 - 16381 mRNA_8013 0.54 2.4
213,429 - 2.1
213,537 - 0.4
213,573 - 0.2
213,580 - -0.9
213,585 + -0.8
213,636 - 0.2
213,643 - 1.6
213,649 - -0.4
213,651 + -0.3
213,651 + -0.4
213,757 - 0.6
213,766 + 16382 mRNA_8014 0.11 1.3
213,777 - 16382 mRNA_8014 0.11 -1.5
213,780 - 16382 mRNA_8014 0.12 2.4
213,785 - 16382 mRNA_8014 0.12 1.8
213,786 + 16382 mRNA_8014 0.12 -0.7
213,798 - 16382 mRNA_8014 0.13 0.4
213,804 - 16382 mRNA_8014 0.14 1.9
213,934 + 16382 mRNA_8014 0.24 1.0
214,101 + 16382 mRNA_8014 0.38 -0.3
214,105 + 16382 mRNA_8014 0.38 1.1
214,354 - 16382 mRNA_8014 0.59 -2.8
214,533 - 16382 mRNA_8014 0.74 -1.4
214,791 - 0.0
214,796 + -0.5
214,944 + 0.7
215,235 - 0.8
215,263 - 16383 mRNA_8015 0.12 1.7
215,308 - 16383 mRNA_8015 0.16 0.6
215,312 - 16383 mRNA_8015 0.17 0.4
215,491 + 16383 mRNA_8015 0.35 -0.4
215,519 - 16383 mRNA_8015 0.38 -1.4
215,539 + 16383 mRNA_8015 0.41 -0.4
215,540 - 16383 mRNA_8015 0.41 2.9
215,548 - 16383 mRNA_8015 0.41 0.1
215,548 + 16383 mRNA_8015 0.41 0.2
215,558 + 16383 mRNA_8015 0.42 -0.1
215,582 + 16383 mRNA_8015 0.45 -0.2
215,598 - 16383 mRNA_8015 0.47 -0.4
215,620 - 16383 mRNA_8015 0.49 0.6
215,661 + 16383 mRNA_8015 0.53 -0.2
215,667 - 16383 mRNA_8015 0.54 0.3
215,671 - 16383 mRNA_8015 0.54 -0.3
215,686 + 16383 mRNA_8015 0.56 -1.5
215,692 + 16383 mRNA_8015 0.57 0.3
215,834 - 16383 mRNA_8015 0.71 -1.1