Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8012

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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208,904 - 0.4
208,955 + 1.3
208,958 - -0.4
208,965 - -1.5
208,969 - -0.7
209,011 - 0.1
209,162 + 1.1
209,168 + -0.8
209,438 + 0.1
209,588 + 16380 mRNA_8012 0.14 -1.1
209,596 + 16380 mRNA_8012 0.14 -0.5
209,856 + 16380 mRNA_8012 0.25 0.2
210,005 - 16380 mRNA_8012 0.31 0.1
210,036 - 16380 mRNA_8012 0.33 -0.3
210,051 + 16380 mRNA_8012 0.33 1.5
210,312 + 16380 mRNA_8012 0.44 0.2
210,315 - 16380 mRNA_8012 0.45 2.5
210,563 - 16380 mRNA_8012 0.55 2.2
210,914 - 16380 mRNA_8012 0.70 0.6
210,922 - 16380 mRNA_8012 0.71 0.3
210,922 - 16380 mRNA_8012 0.71 -0.0
211,043 - 16380 mRNA_8012 0.76 -0.0
211,199 + 16380 mRNA_8012 0.82 1.4
211,228 + 16380 mRNA_8012 0.84 2.2
211,761 - -0.1
211,775 - 3.6
211,777 - 0.3
211,780 + 0.9
211,783 - 0.1
211,785 - 0.7
211,788 + 0.1
211,790 - 0.8
211,840 - -1.2
211,965 - 0.3
211,978 - 1.3
211,981 + 0.4
211,982 + 1.4
211,997 - 1.5
212,002 - 1.9
212,122 - 1.1
212,128 - 0.4
212,154 + 0.1
212,181 + -0.2
212,198 - 16381 mRNA_8013 0.10 2.9
212,294 - 16381 mRNA_8013 0.18 0.8
212,444 + 16381 mRNA_8013 0.30 -1.3
212,577 + 16381 mRNA_8013 0.40 -0.3