Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8007

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8006: 16374 - Hypothetical Protein, at 197115 to 197847 16374 mRNA_8007: 16375 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 198335 to 201051 16375

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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197,380 - 16374 mRNA_8006 0.36 1.7
197,384 - 16374 mRNA_8006 0.37 1.6
197,512 - 16374 mRNA_8006 0.54 -0.2
197,544 + 16374 mRNA_8006 0.59 0.1
197,556 - 16374 mRNA_8006 0.60 1.4
197,655 + 16374 mRNA_8006 0.74 3.0
197,846 + 0.9
197,971 - 3.0
197,974 - 1.6
197,976 - 1.7
197,986 + 1.0
197,986 + -0.7
197,992 - -1.4
198,003 - 0.1
198,013 + 1.8
198,122 + -0.0
198,126 - 0.5
198,186 + 0.5
198,825 + 16375 mRNA_8007 0.18 0.1
198,870 - 16375 mRNA_8007 0.20 0.4
198,874 + 16375 mRNA_8007 0.20 -0.2
198,875 - 16375 mRNA_8007 0.20 0.0
198,993 + 16375 mRNA_8007 0.24 0.4
198,999 - 16375 mRNA_8007 0.24 0.2
199,220 + 16375 mRNA_8007 0.33 0.1
199,612 + 16375 mRNA_8007 0.47 0.2
199,628 - 16375 mRNA_8007 0.48 0.3
199,845 + 16375 mRNA_8007 0.56 0.8
199,861 - 16375 mRNA_8007 0.56 -0.0
199,931 - 16375 mRNA_8007 0.59 0.2
200,013 - 16375 mRNA_8007 0.62 -0.1
200,016 + 16375 mRNA_8007 0.62 -0.1
200,036 - 16375 mRNA_8007 0.63 -1.2
200,321 + 16375 mRNA_8007 0.73 1.8
200,470 + 16375 mRNA_8007 0.79 1.3
200,479 + 16375 mRNA_8007 0.79 0.0
200,616 - 16375 mRNA_8007 0.84 0.3
200,757 + 16375 mRNA_8007 0.89 0.6
200,787 - -0.1
200,909 - -1.1
200,952 + 1.8
200,954 + -1.2
201,083 - -0.4
201,094 + -0.0
201,098 + 1.4
201,110 + -1.3
201,247 - 0.3
201,386 + 0.1
201,389 - -0.2
201,396 - 1.9
201,396 - -0.7
201,398 - 0.5
201,410 + 0.1
201,413 - -0.2
201,415 - 0.4
201,420 + -1.3
201,424 + -0.5
201,424 + -1.4
201,563 - 0.2
201,563 - 1.7
201,563 - 0.6
201,563 - -0.8
201,584 + -0.8
201,584 - 2.2