Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8003

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8003: 16371 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 190114 to 191045 16371 mRNA_8004: 16372 - K06648 SWI6 regulatory protein SWI6, at 191300 to 193753 16372

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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189,362 + 1.3
189,399 - 0.7
189,417 - -0.3
189,531 + 0.2
189,674 - 1.8
189,694 + -1.1
189,831 + -0.2
189,878 - -1.4
189,886 + -1.4
189,903 + 1.2
189,904 - 0.5
189,946 + 2.3
189,984 - 0.8
189,988 - 1.2
190,005 - 0.8
190,029 - -0.5
190,033 - 0.2
190,038 - 0.9
190,111 - 0.6
190,141 + 1.2
190,149 - 0.3
190,167 + -0.9
190,177 - -0.0
190,193 + -0.6
190,216 - 16371 mRNA_8003 0.11 0.1
190,266 - 16371 mRNA_8003 0.16 1.3
190,390 + 16371 mRNA_8003 0.30 0.8
190,456 - 16371 mRNA_8003 0.37 -0.2
190,480 + 16371 mRNA_8003 0.39 1.6
190,506 + 16371 mRNA_8003 0.42 0.1
190,816 + 16371 mRNA_8003 0.75 0.2
191,091 - 1.3
191,091 + 1.0
191,341 - 0.5
191,839 + 16372 mRNA_8004 0.22 -2.8