Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8001

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180086 to 183760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183994 to 185593 16369 mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186103 to 188392 16370

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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183,029 - 16368 mRNA_8000 0.80 3.7
183,068 + 16368 mRNA_8000 0.81 0.9
183,072 - 16368 mRNA_8000 0.81 1.0
183,453 + 1.3
183,668 + 0.3
183,933 - 0.5
183,934 + 1.5
184,078 - 0.8
184,215 - 16369 mRNA_8001 0.14 1.4
184,251 + 16369 mRNA_8001 0.16 1.9
184,256 - 16369 mRNA_8001 0.16 -0.0
184,389 - 16369 mRNA_8001 0.25 0.0
184,432 + 16369 mRNA_8001 0.27 1.8
184,522 + 16369 mRNA_8001 0.33 1.0
185,395 + 16369 mRNA_8001 0.88 -0.2
185,425 - 16369 mRNA_8001 0.89 0.1
185,544 + 0.7
185,640 - -0.2
185,687 + -0.0
185,689 - 1.3
185,696 + -0.1
185,754 + -1.1
185,775 - -0.2
185,786 + 1.8
185,845 - 0.1
185,881 - 0.9
185,918 + -1.5
185,926 + 0.2
185,933 + 0.8
185,941 + 1.1
185,953 + 0.3
186,134 - 1.4
186,181 + -0.4
186,284 - -0.7
186,332 - 16370 mRNA_8002 0.10 0.3
186,396 - 16370 mRNA_8002 0.13 -0.2
186,423 + 16370 mRNA_8002 0.14 -1.5