Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8000

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7999: 16367 - K10994 RAD9A cell cycle checkpoint control protein RAD9A, at 177844 to 179868 16367 mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180086 to 183760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183994 to 185593 16369

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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179,762 - 0.0
179,880 - -0.2
180,114 - -0.6
180,169 - -0.7
180,226 + 0.2
180,384 - -0.2
180,549 + 16368 mRNA_8000 0.13 1.6
180,724 + 16368 mRNA_8000 0.17 -0.1
180,757 + 16368 mRNA_8000 0.18 0.4
180,858 - 16368 mRNA_8000 0.21 0.1
180,948 + 16368 mRNA_8000 0.23 1.4
181,003 - 16368 mRNA_8000 0.25 -0.3
181,106 - 16368 mRNA_8000 0.28 0.0
181,289 + 16368 mRNA_8000 0.33 0.4
181,417 - 16368 mRNA_8000 0.36 1.0
181,436 + 16368 mRNA_8000 0.37 -0.1
181,754 - 16368 mRNA_8000 0.45 -1.0
182,022 + 16368 mRNA_8000 0.53 0.4
182,052 - 16368 mRNA_8000 0.53 1.0
182,088 - 16368 mRNA_8000 0.54 1.8
182,159 + 16368 mRNA_8000 0.56 0.3
182,455 + 16368 mRNA_8000 0.64 1.8
182,501 - 16368 mRNA_8000 0.66 -1.3
182,787 + 16368 mRNA_8000 0.73 0.5
183,029 - 16368 mRNA_8000 0.80 3.7
183,068 + 16368 mRNA_8000 0.81 0.9
183,072 - 16368 mRNA_8000 0.81 1.0
183,453 + 1.3
183,668 + 0.3
183,933 - 0.5
183,934 + 1.5
184,078 - 0.8
184,215 - 16369 mRNA_8001 0.14 1.4
184,251 + 16369 mRNA_8001 0.16 1.9
184,256 - 16369 mRNA_8001 0.16 -0.0
184,389 - 16369 mRNA_8001 0.25 0.0
184,432 + 16369 mRNA_8001 0.27 1.8
184,522 + 16369 mRNA_8001 0.33 1.0