Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7976

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7975: 16343 - KOG0762 Mitochondrial carrier protein, at 129725 to 131537 16343 mRNA_7976: 16344 - BLAST carbohydrate-binding module family 13 protein [Schizo..., at 131943 to 133643 16344 mRNA_7977: 16345 - K17757 CARKD ATP-dependent NAD(P)H-hydrate dehydratase, at 134234 to 135920 16345

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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130,966 + 16343 mRNA_7975 0.68 0.4
131,060 + 16343 mRNA_7975 0.74 0.5
131,181 - 16343 mRNA_7975 0.80 -1.0
131,224 + 16343 mRNA_7975 0.83 -0.2
131,357 - 1.4
131,482 + 1.2
131,482 + 1.8
131,512 + -1.2
131,653 - -1.4
131,958 - 0.4
131,975 + -0.5
132,014 + 1.8
132,117 - 16344 mRNA_7976 0.10 -0.0
132,243 - 16344 mRNA_7976 0.18 0.1
132,437 - 16344 mRNA_7976 0.29 0.5
132,531 + 16344 mRNA_7976 0.35 0.8
132,743 - 16344 mRNA_7976 0.47 1.0
132,845 + 16344 mRNA_7976 0.53 0.3
133,008 - 16344 mRNA_7976 0.63 0.6
133,458 - 16344 mRNA_7976 0.89 0.5
133,574 + 0.8
133,764 + -1.6
133,801 + 1.7
133,804 - 1.6
133,809 - 0.4
133,819 + 1.6
133,842 + 0.3
133,851 + 1.7
133,903 + 1.9
133,963 - 1.0
134,017 - -0.7
134,041 - -1.6
134,051 + 0.2
134,051 + 1.0
134,068 - 3.7
134,085 - 0.9
134,101 - 1.4
134,103 - 1.2
134,111 + 0.3
134,118 - -0.3
134,126 - 3.3
134,126 - -0.8
134,128 + 1.3
134,130 - 1.5
134,130 - -1.2
134,132 - 1.0
134,132 - -2.5
134,134 - -1.5
134,136 - -0.1
134,148 + 0.4
134,148 + 0.0
134,148 + 0.9
134,149 + 0.1
134,153 - 1.1
134,155 + -1.4
134,301 - 2.5
134,453 + 16345 mRNA_7977 0.13 1.4