Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7973

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7972: 16340 - Hypothetical Protein, at 120428 to 122131 16340 mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122692 to 128410 16341 mRNA_7974: 16342 - Hypothetical Protein, at 128673 to 129137 16342

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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121,948 - 16340 mRNA_7972 0.89 1.2
121,949 - 16340 mRNA_7972 0.89 -0.4
122,110 - 1.3
122,152 + 0.7
122,172 - -0.1
122,408 + -0.2
122,503 - 1.8
122,524 - 1.1
122,702 + -0.2
122,714 - 0.6
123,107 - 1.4
123,383 - 16341 mRNA_7973 0.12 0.3
123,406 - 16341 mRNA_7973 0.12 0.7
123,427 - 16341 mRNA_7973 0.13 0.9
123,427 + 16341 mRNA_7973 0.13 0.2
123,607 + 16341 mRNA_7973 0.16 0.4
123,771 + 16341 mRNA_7973 0.19 1.4
123,974 - 16341 mRNA_7973 0.22 2.0
123,999 + 16341 mRNA_7973 0.23 1.2
124,077 + 16341 mRNA_7973 0.24 -0.4
124,294 - 16341 mRNA_7973 0.28 0.9
124,411 - 16341 mRNA_7973 0.30 1.9
124,690 - 16341 mRNA_7973 0.35 -0.7
124,744 - 16341 mRNA_7973 0.36 0.8
124,774 + 16341 mRNA_7973 0.36 1.8
124,878 + 16341 mRNA_7973 0.38 -2.4
124,962 + 16341 mRNA_7973 0.40 1.9
125,189 - 16341 mRNA_7973 0.44 -0.0
125,217 + 16341 mRNA_7973 0.44 0.8
125,415 - 16341 mRNA_7973 0.48 0.6
125,425 + 16341 mRNA_7973 0.48 0.3
125,425 - 16341 mRNA_7973 0.48 1.9
125,943 - 16341 mRNA_7973 0.57 0.3
126,330 + 16341 mRNA_7973 0.64 -0.2
126,371 - 16341 mRNA_7973 0.64 0.2
127,016 - 16341 mRNA_7973 0.76 -1.0
127,157 - 16341 mRNA_7973 0.78 0.2
128,185 - -0.6
128,281 - 0.6
128,321 + -1.2
128,321 + 1.1
128,574 - 0.3
128,574 + 0.0
128,575 + -0.6
128,575 + 0.3
128,575 + 1.6
128,581 + 1.4
128,587 - 0.1
128,598 + 0.1
128,598 - -0.3
128,603 + -0.8
128,603 + 0.7
128,609 + 0.8
128,609 + 0.3
128,614 + -0.6
128,714 + 0.3
128,722 - 16342 mRNA_7974 0.11 1.6
128,872 - 16342 mRNA_7974 0.43 1.3
128,877 + 16342 mRNA_7974 0.44 -0.1
128,897 - 16342 mRNA_7974 0.48 2.9
129,203 + -0.1
129,230 - 0.8
129,307 - 0.9
129,309 + -0.5
129,309 + -0.1
129,312 - -0.4
129,320 - -0.6
129,338 + 0.3