Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7972

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7971: 16339 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 116954 to 120210 16339 mRNA_7972: 16340 - Hypothetical Protein, at 120428 to 122131 16340 mRNA_7973: 16341 - KOG3511 Sortilin and related receptors, at 122692 to 128410 16341

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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119,439 - 16339 mRNA_7971 0.76 1.7
119,513 + 16339 mRNA_7971 0.79 2.2
119,560 + 16339 mRNA_7971 0.80 -0.4
120,006 + 0.4
120,013 - 2.0
120,198 + 0.6
120,235 - 1.0
120,397 + 1.1
120,420 - -0.0
120,436 + 0.5
120,450 - 0.1
120,564 + -1.5
120,629 + 16340 mRNA_7972 0.12 -0.4
120,648 + 16340 mRNA_7972 0.13 0.3
120,697 + 16340 mRNA_7972 0.16 2.4
120,975 - 16340 mRNA_7972 0.32 2.6
120,977 - 16340 mRNA_7972 0.32 0.5
121,000 - 16340 mRNA_7972 0.34 0.1
121,081 + 16340 mRNA_7972 0.38 -0.7
121,081 + 16340 mRNA_7972 0.38 1.7
121,183 + 16340 mRNA_7972 0.44 -0.0
121,327 + 16340 mRNA_7972 0.53 -0.2
121,431 + 16340 mRNA_7972 0.59 0.4
121,461 - 16340 mRNA_7972 0.61 2.4
121,486 - 16340 mRNA_7972 0.62 -0.9
121,626 + 16340 mRNA_7972 0.70 0.9
121,638 + 16340 mRNA_7972 0.71 0.2
121,665 + 16340 mRNA_7972 0.73 2.3
121,948 - 16340 mRNA_7972 0.89 1.2
121,949 - 16340 mRNA_7972 0.89 -0.4
122,110 - 1.3
122,152 + 0.7
122,172 - -0.1
122,408 + -0.2
122,503 - 1.8
122,524 - 1.1
122,702 + -0.2
122,714 - 0.6
123,107 - 1.4