Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7967

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7966: 16334 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 110681 to 111565 16334 mRNA_7967: 16335 - Hypothetical Protein, at 112365 to 112943 16335 mRNA_7968: 16336 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 112971 to 114201 16336

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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111,473 + 16334 mRNA_7966 0.89 -0.4
111,605 + -0.9
111,662 + 0.5
111,667 - 1.1
111,682 + 0.2
111,682 - -0.8
111,728 + 0.0
111,753 + -0.3
111,755 + -1.6
111,761 - 2.2
111,764 + 0.3
111,767 - 1.0
111,772 - 2.3
111,780 + 0.9
111,793 - -1.2
111,935 + -0.3
112,224 + 0.7
112,225 + 0.8
112,239 - -0.2
112,275 + 0.6
112,360 - -0.6
112,520 + 16335 mRNA_7967 0.27 0.6
112,520 - 16335 mRNA_7967 0.27 -1.2
112,539 + 16335 mRNA_7967 0.30 0.2
112,539 + 16335 mRNA_7967 0.30 2.0
112,662 + 16335 mRNA_7967 0.51 2.5
112,677 - 16335 mRNA_7967 0.54 0.2
112,678 + 16335 mRNA_7967 0.54 2.5
112,816 - 16335 mRNA_7967 0.78 -0.2
112,820 - 16335 mRNA_7967 0.79 -0.5
112,999 + 0.7
113,203 + 16336 mRNA_7968 0.19 0.6
113,231 + 16336 mRNA_7968 0.21 -1.6
113,255 - 16336 mRNA_7968 0.23 -0.6
113,255 - 16336 mRNA_7968 0.23 1.4
113,257 - 16336 mRNA_7968 0.23 1.1
113,286 + 16336 mRNA_7968 0.26 -0.7
113,286 + 16336 mRNA_7968 0.26 -0.4
113,286 + 16336 mRNA_7968 0.26 2.9
113,429 + 16336 mRNA_7968 0.37 0.6
113,442 - 16336 mRNA_7968 0.38 -0.9
113,502 - 16336 mRNA_7968 0.43 2.2
113,508 - 16336 mRNA_7968 0.44 -0.8
113,532 + 16336 mRNA_7968 0.46 1.5
113,564 - 16336 mRNA_7968 0.48 1.2
113,567 + 16336 mRNA_7968 0.48 -0.5
113,568 - 16336 mRNA_7968 0.48 1.6
113,576 + 16336 mRNA_7968 0.49 0.6
113,590 - 16336 mRNA_7968 0.50 3.0
113,649 + 16336 mRNA_7968 0.55 -0.0
113,690 - 16336 mRNA_7968 0.58 0.1
113,792 - 16336 mRNA_7968 0.67 2.1
113,860 - 16336 mRNA_7968 0.72 -1.4
113,919 + 16336 mRNA_7968 0.77 1.5