Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7954

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85721 to 88276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88821 to 92965 16322 mRNA_7955: 16323 - K00128 ALDH aldehyde dehydrogenase (NAD+), at 93400 to 95869 16323

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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87,867 - 16321 mRNA_7953 0.84 -0.0
87,958 - 16321 mRNA_7953 0.88 0.5
88,107 + 0.1
88,246 - 0.2
88,266 - -0.4
88,389 + 1.1
88,443 - -0.2
88,450 + 0.1
88,471 - 0.0
88,501 + 1.1
88,568 - -0.3
88,591 + 2.0
88,592 + 1.2
88,593 - -0.1
88,593 - 1.0
88,605 + 3.0
88,625 + -0.0
88,639 + 0.3
88,705 - 1.4
88,712 + -0.1
88,781 + 2.3
88,873 + -2.1
88,878 + 0.0
88,880 - 1.8
88,896 + 0.8
88,929 + 1.6
88,930 + -1.5
89,003 + -0.1
89,013 + 2.0
89,040 + 1.4
89,180 - 0.6
89,197 - -1.4
89,558 + 16322 mRNA_7954 0.18 0.4
89,664 + 16322 mRNA_7954 0.20 0.1
89,790 + 16322 mRNA_7954 0.23 0.0
89,921 + 16322 mRNA_7954 0.27 1.6
90,027 - 16322 mRNA_7954 0.29 -0.2
90,250 - 16322 mRNA_7954 0.34 1.3
90,617 + 16322 mRNA_7954 0.43 1.0
90,784 + 16322 mRNA_7954 0.47 -0.3
90,960 - 16322 mRNA_7954 0.52 -1.8
90,964 + 16322 mRNA_7954 0.52 1.9
91,083 + 16322 mRNA_7954 0.55 0.0
91,210 - 16322 mRNA_7954 0.58 0.6
91,228 + 16322 mRNA_7954 0.58 2.6
91,317 - 16322 mRNA_7954 0.60 1.7
91,651 + 16322 mRNA_7954 0.68 1.2
91,672 + 16322 mRNA_7954 0.69 0.5
91,988 + 16322 mRNA_7954 0.76 0.2
92,096 - 16322 mRNA_7954 0.79 -0.8
92,142 - 16322 mRNA_7954 0.80 1.5
92,215 - 16322 mRNA_7954 0.82 -1.3
92,246 + 16322 mRNA_7954 0.83 0.2
92,797 + 0.5
92,979 - 0.5
93,326 + 0.4
93,335 - 0.0
93,338 + 0.3
93,342 - 0.3
93,347 + -0.6
93,348 - 0.7
93,349 + 0.4
93,349 + 0.4
93,524 - 1.3
93,893 - 16323 mRNA_7955 0.20 -0.5
93,956 - 16323 mRNA_7955 0.23 -0.9