Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7953

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7953: 16321 - K13667 RUMI, KTELC1 protein glucosyltransferase, at 85721 to 88276 16321 mRNA_7954: 16322 - K01282 E3.4.14.- dipeptidyl aminopeptidase, at 88821 to 92965 16322

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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84,860 - 1.1
85,155 - 0.5
85,172 + -0.5
85,284 + 0.2
85,297 + -1.0
85,466 + 2.8
85,614 - 0.2
85,619 - 0.1
85,627 + 0.3
85,652 + 0.5
85,656 + 0.1
85,714 + 0.4
85,777 - 2.2
85,902 + 1.6
85,943 - 0.0
86,322 + 16321 mRNA_7953 0.24 0.7
86,367 + 16321 mRNA_7953 0.25 0.2
86,461 - 16321 mRNA_7953 0.29 -2.4
86,466 - 16321 mRNA_7953 0.29 1.7
86,810 + 16321 mRNA_7953 0.43 -0.7
86,932 - 16321 mRNA_7953 0.47 1.2
87,119 - 16321 mRNA_7953 0.55 0.7
87,149 + 16321 mRNA_7953 0.56 1.0
87,250 + 16321 mRNA_7953 0.60 0.5
87,265 - 16321 mRNA_7953 0.60 0.9
87,451 + 16321 mRNA_7953 0.68 -0.5
87,486 - 16321 mRNA_7953 0.69 0.5
87,524 - 16321 mRNA_7953 0.71 0.4
87,577 + 16321 mRNA_7953 0.73 1.0
87,657 + 16321 mRNA_7953 0.76 -0.1
87,693 - 16321 mRNA_7953 0.77 2.0
87,867 - 16321 mRNA_7953 0.84 -0.0
87,958 - 16321 mRNA_7953 0.88 0.5
88,107 + 0.1
88,246 - 0.2
88,266 - -0.4
88,389 + 1.1
88,443 - -0.2
88,450 + 0.1
88,471 - 0.0
88,501 + 1.1
88,568 - -0.3
88,591 + 2.0
88,592 + 1.2
88,593 - -0.1
88,593 - 1.0
88,605 + 3.0
88,625 + -0.0
88,639 + 0.3
88,705 - 1.4
88,712 + -0.1
88,781 + 2.3
88,873 + -2.1
88,878 + 0.0
88,880 - 1.8
88,896 + 0.8
88,929 + 1.6
88,930 + -1.5
89,003 + -0.1
89,013 + 2.0
89,040 + 1.4
89,180 - 0.6
89,197 - -1.4