Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7943

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62103 to 65141 16310 mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135 16311 mRNA_7944: 16312 - Hypothetical Protein, at 69518 to 70390 16312

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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65,252 + -0.3
65,353 + -0.0
65,464 + -2.5
65,466 - 1.8
65,503 - 1.2
65,562 + 1.3
65,973 - 16311 mRNA_7943 0.12 0.5
66,101 - 16311 mRNA_7943 0.15 1.4
66,149 + 16311 mRNA_7943 0.17 1.0
66,366 - 16311 mRNA_7943 0.23 0.9
66,390 - 16311 mRNA_7943 0.23 0.0
66,573 - 16311 mRNA_7943 0.29 0.3
66,860 - 16311 mRNA_7943 0.37 0.1
66,950 + 16311 mRNA_7943 0.39 -2.7
67,020 - 16311 mRNA_7943 0.41 0.9
67,722 - 16311 mRNA_7943 0.61 0.4
68,240 + 16311 mRNA_7943 0.75 0.7
68,243 - 16311 mRNA_7943 0.75 0.2
68,350 + 16311 mRNA_7943 0.78 -0.0
68,619 - 16311 mRNA_7943 0.86 0.3
68,811 + -1.1
68,911 + -0.6
68,924 + 0.9
69,155 + 0.7
69,190 + 2.4
69,341 + 0.1
69,349 - 0.0
69,360 - 0.4
69,361 + -0.6
69,390 + 3.7
69,438 + -1.0
69,654 + 16312 mRNA_7944 0.16 -0.5
69,661 - 16312 mRNA_7944 0.16 -0.5
69,797 - 16312 mRNA_7944 0.32 0.7
69,944 - 16312 mRNA_7944 0.49 0.4
69,961 - 16312 mRNA_7944 0.51 2.2
69,986 + 16312 mRNA_7944 0.54 -0.8
70,064 - 16312 mRNA_7944 0.63 -0.1
70,110 + 16312 mRNA_7944 0.68 1.3