Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7919

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22432 to 23509 16287 mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24120 to 24922 16288

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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21,538 + 1.1
21,584 - 1.6
21,590 + -0.1
21,590 + 0.9
21,596 + -0.1
21,607 + -0.5
21,618 + 1.7
21,755 - 1.3
21,763 + -1.6
21,764 + 0.4
21,770 + 1.8
21,813 - 1.8
21,815 - 1.1
21,815 + -0.7
21,819 - 0.2
21,819 + -1.3
21,820 - 0.7
21,821 + 1.3
21,824 - 0.0
21,831 - 2.0
21,833 - 0.7
21,835 - 0.5
21,836 + 0.0
21,837 - 0.4
21,837 + 1.0
21,838 + -0.6
21,842 + 0.9
21,845 - 1.1
21,847 + -0.0
21,848 + 0.4
21,851 + 3.5
21,867 + 2.7
21,868 - 0.4
21,870 - -0.7
21,897 + -0.4
21,932 - 2.1
22,031 - 0.3
22,122 + 1.5
22,162 + -0.1
22,181 + -1.1
22,193 + -0.4
22,297 + 1.2
22,436 + -1.0
22,474 - 0.6
22,743 - 16287 mRNA_7919 0.29 -0.6
22,752 + 16287 mRNA_7919 0.30 1.6
22,759 + 16287 mRNA_7919 0.30 0.7
22,920 + 16287 mRNA_7919 0.45 1.4
22,960 - 16287 mRNA_7919 0.49 -0.4
23,214 + 16287 mRNA_7919 0.73 0.3
23,443 + 1.1
23,865 + 0.9
23,900 + -0.6
23,902 - 0.1
23,950 + 0.6
24,079 + 0.5
24,136 + 0.5
24,299 - 16288 mRNA_7920 0.22 1.0
24,319 + 16288 mRNA_7920 0.25 0.7
24,323 - 16288 mRNA_7920 0.25 1.6
24,434 + 16288 mRNA_7920 0.39 0.5