Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7894

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7893: 16261 - KOG0928 Pattern-formation protein/guanine nucleotide exchange factor, at 1314179 to 1318508 16261 mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1318787 to 1321877 16262

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,317,806 + 16261 mRNA_7893 0.84 0.2
1,318,070 - 16261 mRNA_7893 0.90 0.7
1,318,339 + -1.8
1,318,551 + 0.3
1,318,803 + -2.0
1,318,883 + 0.9
1,319,109 + 16262 mRNA_7894 0.10 1.3
1,319,155 - 16262 mRNA_7894 0.12 0.2
1,319,237 + 16262 mRNA_7894 0.15 0.8
1,319,254 + 16262 mRNA_7894 0.15 0.4
1,319,514 - 16262 mRNA_7894 0.24 0.5
1,319,521 - 16262 mRNA_7894 0.24 0.4
1,319,578 + 16262 mRNA_7894 0.26 3.3
1,319,588 + 16262 mRNA_7894 0.26 1.9
1,319,593 - 16262 mRNA_7894 0.26 1.6
1,319,693 + 16262 mRNA_7894 0.29 -1.9
1,319,749 - 16262 mRNA_7894 0.31 -1.3
1,319,768 + 16262 mRNA_7894 0.32 1.0
1,319,791 + 16262 mRNA_7894 0.32 -2.0
1,319,795 - 16262 mRNA_7894 0.33 0.6
1,319,918 + 16262 mRNA_7894 0.37 -2.7
1,320,029 + 16262 mRNA_7894 0.40 -0.1
1,320,148 + 16262 mRNA_7894 0.44 -0.9
1,320,337 + 16262 mRNA_7894 0.50 0.7
1,320,465 + 16262 mRNA_7894 0.54 -0.6
1,320,465 + 16262 mRNA_7894 0.54 0.5
1,320,468 - 16262 mRNA_7894 0.54 0.7
1,320,470 - 16262 mRNA_7894 0.54 0.3
1,320,481 - 16262 mRNA_7894 0.55 0.5
1,320,513 - 16262 mRNA_7894 0.56 1.1
1,320,591 - 16262 mRNA_7894 0.58 0.8
1,320,591 - 16262 mRNA_7894 0.58 -0.5
1,320,608 - 16262 mRNA_7894 0.59 0.6
1,320,622 - 16262 mRNA_7894 0.59 0.3
1,320,652 - 16262 mRNA_7894 0.60 2.6
1,320,668 + 16262 mRNA_7894 0.61 -0.1
1,320,978 + 16262 mRNA_7894 0.71 2.4
1,321,021 - 16262 mRNA_7894 0.72 -2.1
1,321,036 - 16262 mRNA_7894 0.73 0.6
1,321,172 + 16262 mRNA_7894 0.77 2.3
1,321,178 - 16262 mRNA_7894 0.77 1.6
1,321,193 + 16262 mRNA_7894 0.78 1.2
1,321,627 + 1.6
1,321,635 - -1.0
1,321,891 - 0.5
1,321,987 + 1.0
1,322,022 - 1.5
1,322,071 + 1.2
1,322,146 + -0.3
1,322,183 - 0.7
1,322,184 + 1.2
1,322,288 - 3.1
1,322,328 - 0.3