Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7893

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7892: 16260 - K08496 GOSR2, BOS1 golgi SNAP receptor complex member 2, at 1312229 to 1313208 16260 mRNA_7893: 16261 - KOG0928 Pattern-formation protein/guanine nucleotide exchange factor, at 1314179 to 1318508 16261 mRNA_7894: 16262 - HMMPfam-Eisosome component PIL1-PF13805, at 1318787 to 1321877 16262

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,313,388 - -0.8
1,313,416 + -0.4
1,313,425 + -1.5
1,313,558 + 1.0
1,313,565 + -0.1
1,313,724 + 3.0
1,313,890 + 1.6
1,314,553 + 3.5
1,315,326 - 16261 mRNA_7893 0.26 0.2
1,315,412 - 16261 mRNA_7893 0.28 2.0
1,315,425 - 16261 mRNA_7893 0.29 1.7
1,315,886 - 16261 mRNA_7893 0.39 0.2
1,316,049 - 16261 mRNA_7893 0.43 0.3
1,316,153 + 16261 mRNA_7893 0.46 -1.4
1,316,507 - 16261 mRNA_7893 0.54 -1.3
1,316,732 - 16261 mRNA_7893 0.59 -1.2
1,316,813 - 16261 mRNA_7893 0.61 1.6
1,316,857 - 16261 mRNA_7893 0.62 -1.4
1,316,893 + 16261 mRNA_7893 0.63 -1.2
1,316,928 - 16261 mRNA_7893 0.63 0.9
1,317,054 - 16261 mRNA_7893 0.66 -0.4
1,317,063 + 16261 mRNA_7893 0.67 1.0
1,317,203 - 16261 mRNA_7893 0.70 1.3
1,317,356 + 16261 mRNA_7893 0.73 0.1
1,317,465 + 16261 mRNA_7893 0.76 0.9
1,317,517 + 16261 mRNA_7893 0.77 -0.1
1,317,660 - 16261 mRNA_7893 0.80 2.8
1,317,774 + 16261 mRNA_7893 0.83 -0.6
1,317,806 + 16261 mRNA_7893 0.84 0.2
1,318,070 - 16261 mRNA_7893 0.90 0.7
1,318,339 + -1.8
1,318,551 + 0.3
1,318,803 + -2.0
1,318,883 + 0.9
1,319,109 + 16262 mRNA_7894 0.10 1.3
1,319,155 - 16262 mRNA_7894 0.12 0.2
1,319,237 + 16262 mRNA_7894 0.15 0.8
1,319,254 + 16262 mRNA_7894 0.15 0.4