Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7854

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7853: 16221 - Hypothetical Protein, at 1226936 to 1227400 16221 mRNA_7854: 16222 - HMMPfam-Fungal protein of unknown function (DUF2015)-PF09435, at 1227887 to 1228457 16222 mRNA_7855: 16223 - K15443 TRM82, WDR4 tRNA (guanine-N(7)-)-methyltransferase subunit TRM82, at 1228855 to 1230795 16223

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,226,895 + 0.8
1,226,900 + -1.1
1,227,047 + 16221 mRNA_7853 0.24 1.2
1,227,102 - 16221 mRNA_7853 0.36 -0.7
1,227,102 - 16221 mRNA_7853 0.36 1.1
1,227,118 - 16221 mRNA_7853 0.39 -0.3
1,227,119 - 16221 mRNA_7853 0.39 3.3
1,227,151 - 16221 mRNA_7853 0.46 0.9
1,227,158 - 16221 mRNA_7853 0.48 0.2
1,227,163 - 16221 mRNA_7853 0.49 -0.9
1,227,175 - 16221 mRNA_7853 0.51 -0.1
1,227,203 + 16221 mRNA_7853 0.57 0.4
1,227,230 - 16221 mRNA_7853 0.63 -0.2
1,227,236 + 16221 mRNA_7853 0.65 1.0
1,227,241 + 16221 mRNA_7853 0.66 -1.0
1,227,244 - 16221 mRNA_7853 0.66 0.8
1,227,249 - 16221 mRNA_7853 0.67 -0.6
1,227,343 + 16221 mRNA_7853 0.88 1.9
1,227,355 - 1.6
1,227,432 - 2.4
1,227,536 - -1.9
1,227,536 + -0.6
1,227,537 + -0.3
1,227,551 - 0.6
1,227,566 - 1.0
1,227,645 - 0.6
1,227,654 - -0.8
1,227,673 - 0.8
1,227,695 - 1.2
1,227,963 - 16222 mRNA_7854 0.13 -3.7
1,228,072 + 16222 mRNA_7854 0.32 1.1
1,228,171 + 16222 mRNA_7854 0.50 -0.3
1,228,354 + 16222 mRNA_7854 0.82 0.2
1,228,375 + 16222 mRNA_7854 0.85 -0.0
1,228,634 - 2.3
1,228,775 - -2.6
1,228,824 + -0.9
1,228,961 - -2.2
1,229,119 + 16223 mRNA_7855 0.14 -1.2
1,229,256 + 16223 mRNA_7855 0.21 0.0
1,229,397 - 16223 mRNA_7855 0.28 -1.3