Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7814

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7813: 16181 - K01476 E3.5.3.1, rocF, arg arginase, at 1128951 to 1130543 16181 mRNA_7814: 16182 - K01620 ltaE threonine aldolase, at 1131411 to 1132941 16182 mRNA_7815: 16183 - Hypothetical Protein, at 1133372 to 1134436 16183

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,130,556 - 0.0
1,130,569 + -0.5
1,130,656 - -0.1
1,130,666 - -0.4
1,130,678 - -0.2
1,130,687 + -0.2
1,130,693 - 0.1
1,130,732 - -0.6
1,130,788 - 0.9
1,130,810 - 1.9
1,130,818 - 0.3
1,130,820 - 0.7
1,130,822 - -1.2
1,130,824 - 1.2
1,130,833 + -0.4
1,130,837 + -0.2
1,130,838 + 0.5
1,130,846 + 2.0
1,131,135 + -0.4
1,131,135 + 0.3
1,131,139 + 2.4
1,131,141 + 0.9
1,131,160 + 1.2
1,131,276 - 0.1
1,131,283 - -0.2
1,131,556 + -0.1
1,131,601 - 16182 mRNA_7814 0.12 -0.1
1,131,825 - 16182 mRNA_7814 0.27 0.4
1,131,871 - 16182 mRNA_7814 0.30 1.1
1,131,874 + 16182 mRNA_7814 0.30 -0.1
1,131,879 + 16182 mRNA_7814 0.31 -0.7
1,132,143 + 16182 mRNA_7814 0.48 0.3
1,132,299 + 16182 mRNA_7814 0.58 0.0
1,132,458 - 16182 mRNA_7814 0.68 0.7
1,132,460 - 16182 mRNA_7814 0.69 -1.0
1,132,585 + 16182 mRNA_7814 0.77 -2.8
1,132,854 - 0.2
1,133,321 - 0.3
1,133,446 + 0.3
1,133,477 - -0.5
1,133,529 - 16183 mRNA_7815 0.15 -2.7
1,133,620 - 16183 mRNA_7815 0.23 0.4
1,133,759 + 16183 mRNA_7815 0.36 -1.5