Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7787

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1066026 to 1067472 16154 mRNA_7787: 16155 - Hypothetical Protein, at 1067923 to 1069410 16155 mRNA_7788: 16156 - Hypothetical Protein, at 1069801 to 1071312 16156

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,066,925 + 16154 mRNA_7786 0.62 0.0
1,066,971 - 16154 mRNA_7786 0.65 0.9
1,067,105 - 16154 mRNA_7786 0.75 -0.6
1,067,235 + 16154 mRNA_7786 0.84 1.6
1,067,394 - 1.1
1,067,395 - 0.3
1,067,532 + 0.3
1,067,541 + -0.1
1,067,677 - -1.0
1,067,681 - -0.9
1,067,692 - -0.4
1,067,692 - 0.7
1,067,710 + 1.4
1,067,845 + 0.2
1,067,856 + 1.2
1,067,857 - 2.5
1,067,887 + -1.4
1,067,887 + 0.1
1,067,983 - 0.4
1,068,005 + 2.1
1,068,143 + 16155 mRNA_7787 0.15 0.4
1,068,143 + 16155 mRNA_7787 0.15 0.2
1,068,309 + 16155 mRNA_7787 0.26 0.6
1,068,421 - 16155 mRNA_7787 0.33 0.8
1,068,429 + 16155 mRNA_7787 0.34 2.0
1,068,687 - 16155 mRNA_7787 0.51 1.6
1,069,094 - 16155 mRNA_7787 0.79 0.2
1,069,145 - 16155 mRNA_7787 0.82 2.4
1,069,434 + -0.9
1,069,568 + -1.5
1,069,611 + 0.2
1,069,698 - -0.4
1,069,712 - 2.7
1,069,856 - 0.2
1,069,872 + 1.0
1,069,874 - -0.4
1,069,874 - -0.0
1,069,876 - 1.0
1,069,962 + 16156 mRNA_7788 0.11 1.9
1,070,013 + 16156 mRNA_7788 0.14 -0.4
1,070,195 + 16156 mRNA_7788 0.26 -0.2
1,070,195 + 16156 mRNA_7788 0.26 0.2
1,070,285 + 16156 mRNA_7788 0.32 1.4
1,070,285 + 16156 mRNA_7788 0.32 -1.2
1,070,318 + 16156 mRNA_7788 0.34 -1.0