Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7786

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7785: 16153 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1063433 to 1065460 16153 mRNA_7786: 16154 - HMMPfam-Centromere-associated protein K-PF11802, at 1066026 to 1067472 16154 mRNA_7787: 16155 - Hypothetical Protein, at 1067923 to 1069410 16155

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,065,124 + 16153 mRNA_7785 0.83 -0.6
1,065,356 - 0.0
1,065,357 + -1.3
1,065,358 - 1.3
1,065,361 + -1.3
1,065,363 + 1.0
1,065,501 - 0.0
1,065,501 - 0.5
1,065,651 - 0.3
1,065,656 + 0.9
1,065,674 + 0.3
1,065,690 - 0.7
1,065,799 + 3.3
1,065,819 + -1.4
1,066,091 - 2.3
1,066,098 + -0.2
1,066,099 - 1.6
1,066,240 + 16154 mRNA_7786 0.15 0.2
1,066,633 - 16154 mRNA_7786 0.42 -0.5
1,066,642 - 16154 mRNA_7786 0.43 0.2
1,066,925 + 16154 mRNA_7786 0.62 0.0
1,066,971 - 16154 mRNA_7786 0.65 0.9
1,067,105 - 16154 mRNA_7786 0.75 -0.6
1,067,235 + 16154 mRNA_7786 0.84 1.6
1,067,394 - 1.1
1,067,395 - 0.3
1,067,532 + 0.3
1,067,541 + -0.1
1,067,677 - -1.0
1,067,681 - -0.9
1,067,692 - -0.4
1,067,692 - 0.7
1,067,710 + 1.4
1,067,845 + 0.2
1,067,856 + 1.2
1,067,857 - 2.5
1,067,887 + -1.4
1,067,887 + 0.1
1,067,983 - 0.4
1,068,005 + 2.1
1,068,143 + 16155 mRNA_7787 0.15 0.4
1,068,143 + 16155 mRNA_7787 0.15 0.2
1,068,309 + 16155 mRNA_7787 0.26 0.6
1,068,421 - 16155 mRNA_7787 0.33 0.8
1,068,429 + 16155 mRNA_7787 0.34 2.0