Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7739

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960464 to 961733 16106 mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962010 to 966625 16107 mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966858 to 968054 16108

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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961,150 + 16106 mRNA_7738 0.54 -0.2
961,157 - 16106 mRNA_7738 0.55 2.0
961,215 + 16106 mRNA_7738 0.59 0.8
961,584 + 16106 mRNA_7738 0.88 0.6
961,649 - 0.1
961,655 + 0.2
961,658 - -0.6
961,912 + 1.4
962,030 - -0.0
962,620 - 16107 mRNA_7739 0.13 0.6
962,813 + 16107 mRNA_7739 0.17 2.4
962,954 - 16107 mRNA_7739 0.20 -1.9
962,994 + 16107 mRNA_7739 0.21 0.3
963,092 + 16107 mRNA_7739 0.23 -1.1
963,433 + 16107 mRNA_7739 0.31 1.6
963,525 + 16107 mRNA_7739 0.33 2.4
963,529 - 16107 mRNA_7739 0.33 0.3
963,573 + 16107 mRNA_7739 0.34 -0.3
963,806 + 16107 mRNA_7739 0.39 0.8
963,978 + 16107 mRNA_7739 0.43 -1.4
963,990 + 16107 mRNA_7739 0.43 0.3
964,006 - 16107 mRNA_7739 0.43 -1.4
964,007 + 16107 mRNA_7739 0.43 0.1
964,097 - 16107 mRNA_7739 0.45 1.9
964,283 + 16107 mRNA_7739 0.49 -1.4
965,172 + 16107 mRNA_7739 0.69 3.7
965,195 + 16107 mRNA_7739 0.69 -0.3
965,437 + 16107 mRNA_7739 0.74 -0.2
965,935 - 16107 mRNA_7739 0.85 -0.3
966,019 + 16107 mRNA_7739 0.87 -0.7
966,040 - 16107 mRNA_7739 0.87 1.9
966,048 + 16107 mRNA_7739 0.87 -0.3
966,106 - 16107 mRNA_7739 0.89 3.5
966,150 - 16107 mRNA_7739 0.90 0.2
966,156 + 16107 mRNA_7739 0.90 0.1
966,204 - 1.0
966,204 - -0.0
966,220 + -0.3
966,242 - 0.6
966,246 + 0.4
966,350 + -1.5
966,400 - 2.4
966,510 + -1.3
966,759 + 0.6
966,763 + 0.6
966,768 + -0.1
966,935 - -3.1
966,949 - -0.2
966,997 + 16108 mRNA_7740 0.12 1.4
966,997 + 16108 mRNA_7740 0.12 0.2
966,997 + 16108 mRNA_7740 0.12 -2.8
966,997 + 16108 mRNA_7740 0.12 1.0
967,114 - 16108 mRNA_7740 0.21 1.8
967,193 - 16108 mRNA_7740 0.28 -0.8
967,215 + 16108 mRNA_7740 0.30 1.8
967,288 + 16108 mRNA_7740 0.36 0.9