Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7727

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7726: 16094 - KOG1231 Proteins containing the FAD binding domain, at 937355 to 939752 16094 mRNA_7727: 16095 - K13354 SLC25A17, PMP34 solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17, at 940127 to 941686 16095 mRNA_7728: 16096 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 942668 to 943581 16096

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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939,135 + 16094 mRNA_7726 0.74 -0.0
939,734 - 0.4
939,884 - 0.2
939,891 - 1.5
939,909 - -2.2
939,909 + -1.4
939,937 + -0.5
939,959 - 0.0
940,191 - 1.8
940,220 + 1.3
940,266 + -1.1
940,268 - -0.7
940,510 - 16095 mRNA_7727 0.25 1.5
940,531 + 16095 mRNA_7727 0.26 -0.9
940,536 - 16095 mRNA_7727 0.26 1.9
940,544 + 16095 mRNA_7727 0.27 0.6
940,827 + 16095 mRNA_7727 0.45 -1.3
940,913 - 16095 mRNA_7727 0.50 -1.1
940,931 - 16095 mRNA_7727 0.52 -0.1
941,217 - 16095 mRNA_7727 0.70 0.0
941,420 + 16095 mRNA_7727 0.83 -1.4
941,445 - 16095 mRNA_7727 0.84 -1.7
941,553 + 1.4
941,664 - 0.1
941,705 - 1.4
941,720 + 0.7
941,832 + -1.0
941,842 - -0.4
941,966 - 0.2
941,970 - 0.3
941,981 + 0.2
942,063 + 2.3
942,115 - 0.5
942,136 + 0.4
942,290 + 0.3
942,438 - 2.7
942,471 + 0.4