Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7708

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895894 to 899712 16075 mRNA_7708: 16076 - Hypothetical Protein, at 900056 to 901517 16076 mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902207 to 904253 16077

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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899,295 - 16075 mRNA_7707 0.89 0.2
899,357 - 2.5
899,381 + -0.6
899,460 - -0.9
899,612 - 2.1
899,804 + 0.8
899,867 + 0.3
899,889 - 2.1
900,081 - 0.1
900,103 + 1.8
900,929 + 16076 mRNA_7708 0.60 0.3
901,046 + 16076 mRNA_7708 0.68 -0.1
901,126 + 16076 mRNA_7708 0.73 0.3
901,471 + -0.6
901,486 + 1.0
901,504 + 0.4
901,505 + 0.8
901,509 + 0.6
901,509 + 0.2
901,522 - 0.4
901,524 + 0.3
901,544 - 0.9
901,547 + -1.6
901,607 + 0.6
901,617 - 1.5
901,635 - 1.1
901,668 - -0.0
901,669 - 1.2
901,677 - 0.0
901,680 - -0.5
901,683 + -0.1
901,694 + 0.2
901,695 - 1.1
901,695 + 0.2
901,696 - -0.2
901,697 - -0.0
901,699 - 0.1
901,705 - 0.4
901,735 - 0.1
901,736 + 1.3
901,737 - -0.9
901,738 + -0.7
901,738 + 1.2
901,738 + -0.6
901,739 + 0.3
901,743 - -1.1
901,749 - 0.4
901,750 - 2.8
901,757 + 1.6
901,776 - 1.8
901,778 + 0.0
901,781 - 1.7
901,782 + 1.7
901,787 - 0.0
901,787 + 0.2
901,800 + 0.5
901,802 - 0.9
901,803 + 0.4
901,813 + -0.4
901,815 + 0.7
901,820 - 3.0
901,828 - -1.1
901,854 - 1.0
901,860 - 0.6
901,862 - 0.9
901,866 - -0.1
901,888 + 3.9
901,925 - -0.9
901,946 - 0.4
901,959 - 0.7
901,962 + 0.2
901,962 - 0.3
901,964 + 0.8
901,965 - 0.2
901,971 + -0.2
901,977 + 0.0
901,991 + 1.2
901,992 - 1.0
902,011 + 0.1
902,100 - 0.0
902,102 - 1.9
902,104 + -0.4
902,156 + -0.7
902,254 - 1.0
902,398 + 0.4