Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7701

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874959 to 876595 16068 mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877198 to 880311 16069 mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880758 to 882745 16070

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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876,225 + 16068 mRNA_7700 0.77 1.6
876,339 + 16068 mRNA_7700 0.84 0.4
876,481 - -0.1
876,495 + 0.1
876,517 + -0.1
876,524 - -0.0
876,564 - -0.2
876,641 - -0.2
876,661 + 0.7
876,669 + -1.1
876,761 - 0.5
876,809 - 0.4
876,823 + -0.6
876,824 + 2.1
876,839 + 0.2
876,839 + 0.5
876,940 + 1.2
876,942 - -1.1
876,946 - 0.2
876,946 - -0.9
876,948 - 0.3
876,950 - 0.3
876,950 - -1.2
876,951 + 0.1
876,960 - -1.0
876,961 - 0.1
876,994 - 1.5
877,009 + 0.2
877,020 + -0.1
877,035 + -1.2
877,099 + -3.6
877,113 - 1.1
877,121 + -0.6
877,137 + 0.9
877,145 - 1.8
877,151 - 0.5
877,152 + 0.6
877,173 + -0.5
877,249 - 0.4
877,259 + 1.4
877,319 + 2.6
877,379 - 1.3
877,401 + 0.4
877,409 + -0.3
877,415 - -0.4
877,546 + 16069 mRNA_7701 0.11 0.7
877,709 + 16069 mRNA_7701 0.16 -0.4
877,714 + 16069 mRNA_7701 0.17 0.3
878,126 - 16069 mRNA_7701 0.30 1.1
878,258 + 16069 mRNA_7701 0.34 -0.4
878,593 - 16069 mRNA_7701 0.45 0.1
878,600 + 16069 mRNA_7701 0.45 1.1
878,758 + 16069 mRNA_7701 0.50 -1.1
879,033 + 16069 mRNA_7701 0.59 -0.7
879,180 + 16069 mRNA_7701 0.64 -0.8
879,368 - 16069 mRNA_7701 0.70 0.5
879,602 + 16069 mRNA_7701 0.77 1.4
879,785 + 16069 mRNA_7701 0.83 -0.3
879,915 - 16069 mRNA_7701 0.87 1.1
879,915 - 16069 mRNA_7701 0.87 2.2
879,927 + 16069 mRNA_7701 0.88 0.5
879,935 + 16069 mRNA_7701 0.88 0.4
880,200 + 0.7
880,204 + 0.3
880,206 + -1.2
880,217 - 0.1
880,367 - 2.0
880,376 + 0.7
880,463 - -0.9
880,502 + -1.0
880,507 - -0.4
880,515 - -0.2
880,641 - 0.0
880,678 + -0.6
880,822 + -1.2
880,857 + 2.4
880,948 - 0.1
881,101 - 16070 mRNA_7702 0.17 0.9
881,119 - 16070 mRNA_7702 0.18 0.8
881,120 + 16070 mRNA_7702 0.18 -0.4
881,223 - 16070 mRNA_7702 0.23 0.2
881,253 - 16070 mRNA_7702 0.25 1.5