Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7692

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849187 to 849939 16059 mRNA_7692: 16060 - HMMPfam-Cell division control protein 14, SIN component-PF08045, at 850554 to 851989 16060 mRNA_7693: 16061 - SUPERFAMILY--SSF57701, at 852118 to 853465 16061

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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849,594 + 16059 mRNA_7691 0.54 -0.3
849,830 + 16059 mRNA_7691 0.85 0.3
849,977 + -2.0
849,985 + -0.8
850,133 + 2.3
850,274 - 0.6
850,289 + 0.8
850,299 + -0.2
850,419 - 0.6
850,582 - 0.3
850,711 - 16060 mRNA_7692 0.11 2.1
850,732 + 16060 mRNA_7692 0.12 1.2
850,765 + 16060 mRNA_7692 0.15 0.2
851,009 + 16060 mRNA_7692 0.32 0.1
851,102 + 16060 mRNA_7692 0.38 -2.6
851,138 - 16060 mRNA_7692 0.41 1.1
851,147 - 16060 mRNA_7692 0.41 -0.2
851,267 + 16060 mRNA_7692 0.50 0.3
851,302 - 16060 mRNA_7692 0.52 3.3
851,324 + 16060 mRNA_7692 0.54 1.3
851,324 + 16060 mRNA_7692 0.54 2.9
851,453 - 16060 mRNA_7692 0.63 -0.4
851,585 - 16060 mRNA_7692 0.72 1.7
851,599 + 16060 mRNA_7692 0.73 0.8
851,624 - 16060 mRNA_7692 0.75 -0.0
851,628 - 16060 mRNA_7692 0.75 0.4
851,637 + 16060 mRNA_7692 0.75 -0.3
851,878 + -1.6
851,878 + 1.6
851,878 + -1.5
852,031 + 1.9
852,048 - 0.6
852,076 + 0.0
852,284 + 16061 mRNA_7693 0.12 2.1
852,483 - 16061 mRNA_7693 0.27 -1.0
852,483 + 16061 mRNA_7693 0.27 1.8
852,550 + 16061 mRNA_7693 0.32 0.4
852,551 + 16061 mRNA_7693 0.32 1.9
852,663 - 16061 mRNA_7693 0.40 -0.7
852,891 - 16061 mRNA_7693 0.57 0.9
852,947 - 16061 mRNA_7693 0.61 -0.7