Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7679

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7678: 16046 - K00657 speG diamine N-acetyltransferase, at 821386 to 822078 16046 mRNA_7679: 16047 - K12861 BCAS2 pre-mRNA-splicing factor SPF27, at 822230 to 823111 16047

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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821,351 + 2.4
821,724 + 16046 mRNA_7678 0.49 -2.0
821,824 + 16046 mRNA_7678 0.63 -0.2
821,827 + 16046 mRNA_7678 0.64 -0.5
821,974 + 16046 mRNA_7678 0.85 1.5
822,093 - -1.2
822,869 - 16047 mRNA_7679 0.72 -0.2
823,043 - -0.3
823,118 - 1.6
823,120 + 0.2
823,130 - -0.3
823,132 - 3.0
823,144 + -3.5
823,150 + 0.4
823,157 + 2.6
823,329 + 1.2
823,476 - 0.7
823,555 - 1.1
823,575 + 0.1
823,712 + 1.2
823,831 - -1.0
823,871 + 0.5
823,957 - 2.3
823,974 - -1.3
823,995 - 1.5
823,996 - 0.0
823,999 - -1.0
824,000 - -2.0
824,004 + 0.2
824,032 + 1.2
824,034 + -1.3
824,034 - -1.4
824,035 + -0.6
824,046 + -0.6
824,050 + -0.5
824,055 + 2.3