Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7662

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7661: 16029 - KOG3337 Protein similar to predicted member of the intramitochondrial sorting protein family, at 787329 to 788508 16029 mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788706 to 790925 16030 mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791381 to 793587 16031

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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788,930 - 16030 mRNA_7662 0.10 5.1
789,111 - 16030 mRNA_7662 0.18 0.8
790,402 - 16030 mRNA_7662 0.76 0.9
790,975 - 1.0
790,988 - -0.2
790,990 + 1.5
790,993 - -0.5
790,995 - -0.1
791,015 - 0.2
791,036 + -1.0
791,092 - 0.1
791,131 - 0.7
791,133 + -0.1
791,151 + 2.0
791,156 + 0.3
791,193 - -0.2
791,199 - -2.8
791,212 + 0.5
791,286 + -3.0
791,290 - -1.6
791,295 + 0.1
791,295 + -0.2
791,312 + -0.3
791,315 - -0.4
791,335 - -0.2
791,339 - 1.3
791,431 + 0.2
791,444 + 0.2
791,446 + 0.1
791,447 - 0.0
791,475 + 0.1
791,760 + 16031 mRNA_7663 0.17 1.7
791,851 + 16031 mRNA_7663 0.21 -2.4