Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7654

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773095 to 776030 16021 mRNA_7654: 16022 - K06911 K06911 uncharacterized protein, at 776597 to 777755 16022 mRNA_7655: 16023 - K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4, at 778145 to 779164 16023

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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775,832 + 0.6
775,898 - -0.1
776,142 - -0.1
776,257 - 0.1
776,276 - 1.1
776,289 + 1.2
776,429 - 1.4
776,432 - 0.2
776,445 + -0.5
776,452 - 1.1
776,452 - -0.5
776,462 - 0.1
776,494 + -0.1
776,602 - 1.5
776,748 + 16022 mRNA_7654 0.13 2.5
776,770 + 16022 mRNA_7654 0.15 0.5
777,005 + 16022 mRNA_7654 0.35 0.1
777,043 + 16022 mRNA_7654 0.38 2.0
777,063 + 16022 mRNA_7654 0.40 2.4
777,474 - 16022 mRNA_7654 0.76 1.7
777,624 - 16022 mRNA_7654 0.89 -0.3
777,803 + -0.2
777,870 + -0.1
777,875 - 2.1
777,915 + 0.2
777,916 - 3.1
778,080 - 0.1
778,665 - 16023 mRNA_7655 0.51 1.2