Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7627

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709563 to 711029 15994 mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711202 to 712775 15995 mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712863 to 715455 15996

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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710,380 + 15994 mRNA_7626 0.56 0.1
710,380 - 15994 mRNA_7626 0.56 0.4
710,387 - 15994 mRNA_7626 0.56 1.2
710,505 - 15994 mRNA_7626 0.64 0.2
710,689 - 15994 mRNA_7626 0.77 -0.5
710,913 - 1.1
710,969 + -1.7
710,987 - 0.5
711,001 + -0.1
711,010 + -0.6
711,075 - 0.6
711,084 - 0.5
711,084 - -0.0
711,087 - 0.8
711,098 + 0.1
711,144 - -0.1
711,193 - 0.5
711,242 - 2.1
711,303 + 2.7
711,424 + 15995 mRNA_7627 0.14 0.2
711,429 + 15995 mRNA_7627 0.14 1.1
711,664 - 15995 mRNA_7627 0.29 2.1
712,103 + 15995 mRNA_7627 0.57 2.2
712,140 + 15995 mRNA_7627 0.60 1.5
712,156 - 15995 mRNA_7627 0.61 -2.2
712,264 - 15995 mRNA_7627 0.67 3.6
712,578 - 15995 mRNA_7627 0.87 1.0
712,603 - 15995 mRNA_7627 0.89 -0.1
712,717 + -1.0
712,872 + -0.8
713,154 - 15996 mRNA_7628 0.11 -0.8
713,454 - 15996 mRNA_7628 0.23 -0.0
713,477 - 15996 mRNA_7628 0.24 0.0
713,516 + 15996 mRNA_7628 0.25 -2.1
713,550 + 15996 mRNA_7628 0.26 0.4
713,602 - 15996 mRNA_7628 0.28 0.5