Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7624

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7623: 15991 - K19564 CTR, HNM1 choline transport protein, at 704159 to 706103 15991 mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706730 to 707973 15992 mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708151 to 709093 15993

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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705,994 - 1.4
706,018 - 1.0
706,023 + 2.6
706,024 - -0.3
706,308 - 1.2
706,311 - 1.0
706,332 - 1.8
706,456 - -1.9
706,470 + 0.2
706,476 + -0.5
706,479 - 1.1
706,481 - 0.3
706,617 - 0.1
706,631 - 0.0
706,789 + 1.7
706,813 - 1.0
706,966 + 15992 mRNA_7624 0.19 -0.1
707,152 + 15992 mRNA_7624 0.34 0.2
707,158 + 15992 mRNA_7624 0.34 0.5
707,250 + 15992 mRNA_7624 0.42 -0.3
707,278 + 15992 mRNA_7624 0.44 -0.5
707,406 + 15992 mRNA_7624 0.54 0.9
707,724 + 15992 mRNA_7624 0.80 1.8
707,785 - 15992 mRNA_7624 0.85 0.2
707,837 + 15992 mRNA_7624 0.89 -1.0
707,848 - 15992 mRNA_7624 0.90 1.4
707,905 + 1.7
707,980 - 2.2
707,994 - 1.2
707,996 + 0.5
707,997 + 0.6
708,002 - 2.4
708,026 - -1.6
708,057 - 1.2
708,130 - 1.2
708,135 + 0.8
708,136 - 1.1
708,465 + 15993 mRNA_7625 0.33 0.3
708,581 + 15993 mRNA_7625 0.46 0.0
708,689 + 15993 mRNA_7625 0.57 0.1
708,757 - 15993 mRNA_7625 0.64 -0.6
708,849 - 15993 mRNA_7625 0.74 0.7
708,853 - 15993 mRNA_7625 0.74 0.7
708,869 - 15993 mRNA_7625 0.76 -1.6
708,883 - 15993 mRNA_7625 0.78 -0.1
708,895 + 15993 mRNA_7625 0.79 0.3
708,898 + 15993 mRNA_7625 0.79 1.5