Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7614

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674825 to 677007 15981 mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677486 to 680218 15982 mRNA_7615: 15983 - K06678 YCG1, CAPG condensin complex subunit 3, at 680522 to 684221 15983

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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676,678 - 15981 mRNA_7613 0.85 0.2
676,693 + 15981 mRNA_7613 0.86 0.6
676,843 + 1.5
677,142 + -0.8
677,155 - -0.6
677,170 - -0.7
677,409 - 2.1
677,410 - 0.1
677,431 + -0.6
677,545 - -2.3
677,563 + -1.4
677,568 - 0.5
677,570 + 0.7
677,573 + -1.6
677,608 - -1.2
677,708 - 1.0
677,750 + -0.5
677,834 + 15982 mRNA_7614 0.13 1.1
677,861 + 15982 mRNA_7614 0.14 -2.6
677,870 - 15982 mRNA_7614 0.14 1.4
677,960 + 15982 mRNA_7614 0.17 -0.1
678,021 - 15982 mRNA_7614 0.20 -0.8
678,023 + 15982 mRNA_7614 0.20 -1.5
678,296 - 15982 mRNA_7614 0.30 0.1
678,433 + 15982 mRNA_7614 0.35 1.7
678,450 - 15982 mRNA_7614 0.35 1.9
678,458 + 15982 mRNA_7614 0.36 -1.2
678,595 - 15982 mRNA_7614 0.41 -0.1
678,629 + 15982 mRNA_7614 0.42 -0.6
678,978 - 15982 mRNA_7614 0.55 0.4
679,251 + 15982 mRNA_7614 0.65 -1.7
679,387 + 15982 mRNA_7614 0.70 0.1
679,564 - 15982 mRNA_7614 0.76 -0.7
679,564 - 15982 mRNA_7614 0.76 0.0
679,792 + 15982 mRNA_7614 0.84 0.5
679,969 + -0.1
679,975 - -0.2
679,992 + 0.2
680,228 - -0.1
680,250 - 0.3
680,251 + 0.2
680,255 + 0.6
680,289 - 0.4
680,289 - 0.8
680,289 + 0.1
680,290 + 0.4
680,295 - 0.2
680,299 - -0.8
680,305 + -0.6
680,305 + -0.8
680,324 + -1.0
680,450 + 0.2